https://github.com/rformassspectrometry/msbackendmassbank

A prototype backend to parse MassBank records into Spectra
https://github.com/rformassspectrometry/msbackendmassbank

massbank spectra

Last synced: about 1 month ago
JSON representation

A prototype backend to parse MassBank records into Spectra

• Host: GitHub
• URL: https://github.com/rformassspectrometry/msbackendmassbank
• Owner: rformassspectrometry
• Created: 2019-11-22T20:28:54.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2024-09-27T13:23:23.000Z (3 months ago)
• Last Synced: 2024-11-08T08:48:15.942Z (about 1 month ago)
• Topics: massbank, spectra
• Language: R
• Homepage: https://rformassspectrometry.github.io/MsBackendMassbank/
• Size: 12 MB
• Stars: 3
• Watchers: 6
• Forks: 5
• Open Issues: 7
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# Mass Spectrometry Data Backend for MassBank Files

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

[![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MsBackendMassbank/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MsBackendMassbank/actions?query=workflow%3AR-CMD-check-bioc)

[![codecov](https://codecov.io/gh/rformassspectrometry/MsBackendMassbank/branch/main/graph/badge.svg?token=OZ4Z5VN50J)](https://codecov.io/gh/rformassspectrometry/MsBackendMassbank)

[![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0)

[![years in bioc](http://bioconductor.org/shields/years-in-bioc/MsBackendMassbank.svg)](https://bioconductor.org/packages/release/bioc/html/MsBackendMassbank.html)

[![Ranking by downloads](http://bioconductor.org/shields/downloads/release/MsBackendMassbank.svg)](https://bioconductor.org/packages/stats/bioc/MsBackendMassbank/)

[![build release](http://bioconductor.org/shields/build/release/bioc/MsBackendMassbank.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/MsBackendMassbank/)

[![build devel](http://bioconductor.org/shields/build/devel/bioc/MsBackendMassbank.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/MsBackendMassbank/)

The `MsBackendMassbank` package provides functionality to import and handle

MS/MS spectrum data from [Massbank](https://github.com/MassBank/MassBank-data)

files or to directly access a MassBank SQL database.  The package defines the

`MsBackendMassbank` and `MsBackendMassbankSql` backends which can be used to

import and use MS2 spectrum data from mgf files respectively MySQL databases

with the [Spectra](https://github.com/rformassspectrometry/Spectra) R package.

For more information see the package

[homepage](https://rformassspectrometry.github.io/MsBackendMassbank).

# Installation

The package can be installed with

```r

install.packages("BiocManager")

BiocManager::install("MsBackendMassbank")

```

# Contributions

Contributions are highly welcome and should follow the [contribution

guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions).

Also, please check the coding style guidelines in the [RforMassSpectrometry

vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).