https://github.com/rformassspectrometry/msbackendmetabolights

MsBackend allowing to retrieve MS data from the MetaboLights repository.
https://github.com/rformassspectrometry/msbackendmetabolights

mass-spectrometry metabolomics metabolomics-data

Last synced: about 1 month ago
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MsBackend allowing to retrieve MS data from the MetaboLights repository.

• Host: GitHub
• URL: https://github.com/rformassspectrometry/msbackendmetabolights
• Owner: rformassspectrometry
• Created: 2024-08-29T12:16:15.000Z (4 months ago)
• Default Branch: main
• Last Pushed: 2024-10-21T13:11:44.000Z (2 months ago)
• Last Synced: 2024-11-01T09:10:35.102Z (about 2 months ago)
• Topics: mass-spectrometry, metabolomics, metabolomics-data
• Language: R
• Homepage: https://rformassspectrometry.github.io/MsBackendMetaboLights/
• Size: 3.54 MB
• Stars: 2
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md

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README

        
# Retrieve Mass Spectrometry Data from MetaboLights

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

[![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MsBackendMetaboLights/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MsBackendMetaboLights/actions?query=workflow%3AR-CMD-check-bioc)

[![codecov](https://codecov.io/gh/rformassspectrometry/MsBackendMetaboLights/graph/badge.svg?token=jpxt7OlA2k)](https://codecov.io/gh/rformassspectrometry/MsBackendMetaboLights)

[![:name status badge](https://rformassspectrometry.r-universe.dev/badges/:name)](https://rformassspectrometry.r-universe.dev/)

[![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0)

This repository provides a *backend* for

[Spectra](https://github.com/RforMassSpectrometry/Spectra) objects that

represents and retrieves mass spectrometry (MS) data directly from metabolomics

experiments deposited at the public

[MetaboLights](https://www.ebi.ac.uk/metabolights/) repository. Mass

spectrometry data files of an experiment are downloaded and cached locally using

the [BiocFileCache](https://bioconductor.org/packages/BiocFileCache) package.

# Installation

The package can be installed with

```r

install.packages("BiocManager")

BiocManager::install("RforMassSpectrometry/MsBackendMetaboLights")

```

# Contributions

Contributions are highly welcome and should follow the [contribution

guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions).

Also, please check the coding style guidelines in the [RforMassSpectrometry

vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).