https://github.com/rformassspectrometry/msdatahub
Mass Spectrometry Data on ExperimentHub
https://github.com/rformassspectrometry/msdatahub
bioconductor data mass-spectrometry metabolomics proteomics r r-package
Last synced: about 1 year ago
JSON representation
Mass Spectrometry Data on ExperimentHub
- Host: GitHub
- URL: https://github.com/rformassspectrometry/msdatahub
- Owner: rformassspectrometry
- Created: 2022-11-14T22:22:12.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2025-04-07T16:30:08.000Z (about 1 year ago)
- Last Synced: 2025-04-14T22:52:56.021Z (about 1 year ago)
- Topics: bioconductor, data, mass-spectrometry, metabolomics, proteomics, r, r-package
- Language: R
- Homepage: https://rformassspectrometry.github.io/MsDataHub/
- Size: 297 KB
- Stars: 1
- Watchers: 2
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
The `MsDataHub` package provides example mass spectrometry data,
peptide spectrum matches or quantitative data from proteomics and
metabolomics experiments. `MsDataHub` is a replacement for `msdata`,
that was growing too much in size The data in `MsDataHub` are served
through the `ExperimentHub` infrastructure, which allows download them
only ones and cache them for further use.
## Installation
To install the package:
```
if (!require("BiocManager"))
install.packages("BiocManager")
BiocManager::install("MsDataHub")
```
## Availabe data
If you want to know what datasets are available:
- Install the package and use `MsDataHub::MsDataHub()`.
- Have a look at the *Available data* section in the vignette.
To contribute datasets, see the *Adding data to `MsDataHub`* in the
vignette.
## More questions
Any other question or issue, feel free to open a GitHub
[issue](https://github.com/rformassspectrometry/MsDataHub/issues) or
ask on the [Bioconductor support
forum](https://support.bioconductor.org/).