https://github.com/rhoitink/simulatedmicroscopy

Python package to create synthetic (fluorescence) microscopy images of (nano)particles and convolution with a point spread function
https://github.com/rhoitink/simulatedmicroscopy

microscopy point-spread-function simulation

Last synced: 2 months ago
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Python package to create synthetic (fluorescence) microscopy images of (nano)particles and convolution with a point spread function

• Host: GitHub
• URL: https://github.com/rhoitink/simulatedmicroscopy
• Owner: rhoitink
• License: mit
• Created: 2022-11-24T15:33:43.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-03-20T08:59:02.000Z (about 2 years ago)
• Last Synced: 2025-09-04T21:26:24.117Z (7 months ago)
• Topics: microscopy, point-spread-function, simulation
• Language: Python
• Homepage: https://rhoitink.github.io/simulatedmicroscopy/
• Size: 1.36 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Citation: CITATION.cff

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README

          
# Simulated Microscopy

[![Latest release](https://badgen.net/github/release/rhoitink/simulatedmicroscopy/stable)](https://github.com/rhoitink/simulatedmicroscopy/releases/latest)

[![MIT License](https://badgen.net/github/license/rhoitink/simulatedmicroscopy)](./LICENSE)

[![Python package](https://github.com/rhoitink/simulatedmicroscopy/actions/workflows/pythonpackage.yml/badge.svg?branch=main)](https://github.com/rhoitink/simulatedmicroscopy/actions/workflows/pythonpackage.yml)

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10678180.svg)](https://doi.org/10.5281/zenodo.10678180)

Python code to simulate 3D microscopy data based on particle coordinates.

Written by Roy Hoitink (L.D.Hoitink@uu.nl)

## Installation

```bash

python -m pip install git+https://github.com/rhoitink/simulatedmicroscopy

```

For more details, look at [the installation file](https://rhoitink.github.io/simulatedmicroscopy/installation/)

## Documentation

Available in at [rhoitink.github.io/simulatedmicroscopy/](https://rhoitink.github.io/simulatedmicroscopy/). There you can also find an [example script](https://rhoitink.github.io/simulatedmicroscopy/example-usage/).