https://github.com/roaldarbol/respirometr

R Package for Analysing Respirometry Data
https://github.com/roaldarbol/respirometr

Last synced: 5 days ago
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R Package for Analysing Respirometry Data

• Host: GitHub
• URL: https://github.com/roaldarbol/respirometr
• Owner: roaldarbol
• License: other
• Created: 2024-04-07T21:36:35.000Z (7 months ago)
• Default Branch: main
• Last Pushed: 2024-10-28T11:45:05.000Z (18 days ago)
• Last Synced: 2024-10-28T14:01:45.470Z (18 days ago)
• Language: R
• Homepage: http://www.roald-arboel.com/respirometr/
• Size: 3.64 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 3
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • License: LICENSE
  • Citation: CITATION.cff

Awesome Lists containing this project

README

        
---

output: github_document

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

```

# respirometr

[![DOI](https://zenodo.org/badge/773406370.svg)](https://zenodo.org/doi/10.5281/zenodo.13235277)

[![R-CMD-check](https://github.com/roaldarbol/respirometr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/roaldarbol/respirometr/actions/workflows/R-CMD-check.yaml)

[![respirometr status

badge](https://roaldarbol.r-universe.dev/badges/respirometr)](https://roaldarbol.r-universe.dev)

[![Codecov test coverage](https://codecov.io/gh/roaldarbol/respirometr/graph/badge.svg)](https://app.codecov.io/gh/roaldarbol/respirometr)

*An R toolbox for analysing respirometry data*

The primary aim of the *respirometr* package is to provide a standardised workflow for analysing respirometry data in a *tidyverse*-friendly syntax. 

## Installation

You can install the development version of *respirometr* with:

Type | Source | Command

---|---|-----------------------

Development | R-universe | `install.packages('respirometr', repos = c('https://roaldarbol.r-universe.dev', 'https://cloud.r-project.org'))`

Development | Github | `renv::install("roaldarbol/respirometr")`

Once you have installed the package, you can load it with:

```{r, eval=FALSE}

library("respirometr")

```

## Documentation

See our docs to go through the workflow, one-by-one:

- [Introduction to `respirometr`](https://www.roald-arboel.com/respirometr/articles/respirometr.html)

- [Read respirometry data](https://www.roald-arboel.com/respirometr/articles/read-licor.html)

- [Combine with movement data]()

## Status

> **Warning**

>

> 🏗️ The package is currently in early development and the interface is subject to change. Feel free to play around and provide feedback.

## Contribute

**If your favourite type of respirometry data or model of respirometer is not currently supported, we'd love to get a sample of your data to support it!** 

If you enjoy the package, please make sure to [cite it](#citation). If you find a bug, feel free to open an issue.

## Citation {#citation}

To cite *respirometr* in publications use:

```{r}

citation("respirometr")

```