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https://github.com/robertoostenveld/bids-tools

Tools for dealing with neuroimaging data in the BIDS structure
https://github.com/robertoostenveld/bids-tools

afni bids fieldtrip fmri fsl meg mri neuroimaging spm

Last synced: 9 days ago
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Tools for dealing with neuroimaging data in the BIDS structure

Host: GitHub
URL: https://github.com/robertoostenveld/bids-tools
Owner: robertoostenveld
License: gpl-3.0
Created: 2017-04-02T07:37:03.000Z (over 7 years ago)
Default Branch: master
Last Pushed: 2018-11-21T11:30:45.000Z (almost 6 years ago)
Last Synced: 2024-10-11T23:25:47.790Z (26 days ago)
Topics: afni, bids, fieldtrip, fmri, fsl, meg, mri, neuroimaging, spm
Language: Python
Homepage: http://bids.neuroimaging.io/
Size: 354 KB
Stars: 26
Watchers: 6
Forks: 7
Open Issues: 4
Metadata Files:
- Readme: README.md
- License: LICENSE

Awesome Lists containing this project

README

        # BIDS tools

This repository contains a number of tools to support the [BIDS](http://bids.neuroimaging.io/) data structure. The documentation is split over multiple topics:

  * [Workflow](doc/workflow.md) - general outline of the workflow to construct a BIDS dataset

  * [Donders](doc/donders.md) - specific documentation that applies to the Donders Centre for Cognitive Neuroimaging (DCCN)

This repository provides the following command-line tools to assist in the workflow:

  * [Reorganize existing BrainVision EEG datasets](doc/reorganize_brainvision_files.md)

  * [Reorganize existing CTF datasets](doc/reorganize_ctf_files.md)

  * [Reorganize existing DICOM datasets](doc/reorganize_dicom_files.md)

  * [Reorganize existing presentation and/or behavioural log files](doc/reorganize_presentation_files.md)

  * [Reorganize existing nifti datasets](doc/reorganize_nifti_files.md)

  * [Convert raw data to BIDS](doc/convert_raw_to_bids.md)

  * [Create sidecar files](doc/create_sidecar_files.md)

The specific details of the BIDS standard can be found elsewhere:

  * [General and MRI](http://bit.ly/bids_mri)

  * [MEG](http://bit.ly/bids_mri)

  * [EEG](http://bit.ly/bids_eeg)

  * [iEEG](http://bit.ly/bids_ieeg)

If you have suggestions or contributions, please fork this repository, make the changes in your clone and send me a pull request.