https://github.com/robsyme/nf-nucmercoverage

A humble nextflow pipeline to compare the coverage of some reference genome(s) by nucmer matches of some other genomes. Produces svg (gg)plots.
https://github.com/robsyme/nf-nucmercoverage

bioinformatics genomics nextflow

Last synced: 24 days ago
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A humble nextflow pipeline to compare the coverage of some reference genome(s) by nucmer matches of some other genomes. Produces svg (gg)plots.

• Host: GitHub
• URL: https://github.com/robsyme/nf-nucmercoverage
• Owner: robsyme
• Created: 2018-05-07T03:11:53.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2018-05-08T07:27:43.000Z (over 6 years ago)
• Last Synced: 2023-10-20T22:52:26.031Z (about 1 year ago)
• Topics: bioinformatics, genomics, nextflow
• Language: Nextflow
• Size: 1.95 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# nf-nucmercoverage

## Introduction

This is a humble nextflow pipeline to compare the coverage of some

reference genome(s) by nucmer matches of some other genomes. It takes

gziped fasta files as input, runs nucmer, and plots the location of

the matches (both repetitive and unique) on the reference genome.