https://github.com/rongtingting/cnv_calling_benchmark
Benchmarking records for scRNA-seq CNV detection.
https://github.com/rongtingting/cnv_calling_benchmark
benchmarking cnv-detection scrna-seq-data
Last synced: 2 months ago
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Benchmarking records for scRNA-seq CNV detection.
- Host: GitHub
- URL: https://github.com/rongtingting/cnv_calling_benchmark
- Owner: Rongtingting
- Created: 2023-03-17T07:00:58.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2024-03-05T10:02:57.000Z (over 2 years ago)
- Last Synced: 2024-03-05T11:25:30.473Z (over 2 years ago)
- Topics: benchmarking, cnv-detection, scrna-seq-data
- Language: Python
- Homepage: https://xclone-cnv.readthedocs.io/en/latest/
- Size: 2.03 MB
- Stars: 1
- Watchers: 3
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# CNV_calling_Benchmark
Benchmarking records for scRNA-seq CNV detection.
- XClone
https://github.com/single-cell-genetics/XClone
- InferCNV
https://github.com/broadinstitute/inferCNV/wiki
- CopyKAT
https://github.com/navinlabcode/copykat
- Numbat
https://github.com/kharchenkolab/numbat
- CaSpER
https://rpubs.com/akdes/673120
https://github.com/akdess/CaSpER
[BAFExtract](https://github.com/akdess/BAFExtract)