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https://github.com/ropensci/piggyback
:package: for using large(r) data files on GitHub
https://github.com/ropensci/piggyback
data-store git-lfs peer-reviewed r r-package rstats
Last synced: 6 days ago
JSON representation
:package: for using large(r) data files on GitHub
- Host: GitHub
- URL: https://github.com/ropensci/piggyback
- Owner: ropensci
- License: gpl-3.0
- Created: 2018-05-11T02:38:52.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2024-06-11T22:55:24.000Z (6 months ago)
- Last Synced: 2024-11-14T11:52:30.737Z (28 days ago)
- Topics: data-store, git-lfs, peer-reviewed, r, r-package, rstats
- Language: R
- Homepage: https://docs.ropensci.org/piggyback
- Size: 997 KB
- Stars: 185
- Watchers: 8
- Forks: 26
- Open Issues: 3
-
Metadata Files:
- Readme: README.Rmd
- License: LICENSE.md
- Code of conduct: .github/CODE_OF_CONDUCT.md
- Codemeta: codemeta.json
Awesome Lists containing this project
- jimsghstars - ropensci/piggyback - :package: for using large(r) data files on GitHub (R)
README
---
output: github_document
---
```{r setup, include = FALSE}
knitr::opts_chunk$set(
eval = FALSE,
collapse = TRUE,
message = FALSE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# piggyback 
[](https://lifecycle.r-lib.org/articles/stages.html)
[](https://github.com/ropensci/piggyback/actions)
[](https://app.codecov.io/github/ropensci/piggyback?branch=master)
[](https://cran.r-project.org/package=piggyback)
[](https://github.com/ropensci/software-review/issues/220)
[](https://zenodo.org/badge/latestdoi/132979724)
[](https://doi.org/10.21105/joss.00971)
`piggyback` provides an R interface for storing files as GitHub release assets,
which is a convenient way for large/binary data files to _piggyback_ onto public
and private GitHub repositories. This package includes functions for file downloads,
uploads, and managing releases, which then are passed to the GitHub API.
No authentication is required to download data from public repositories.
## Installation
Install from CRAN via:
```{r}
install.packages("piggyback")
```
You can install the development version from [GitHub](https://github.com/ropensci/piggyback)
with either r-universe or with remotes:
```{r}
install.packages("piggyback", repos = c('https://ropensci.r-universe.dev', getOption("repos")))
# install.packages("remotes")
remotes::install_github("ropensci/piggyback")
```
## Usage
See [getting started vignette](https://docs.ropensci.org/piggyback/articles/piggyback.html)
for a more comprehensive introduction.
Download data attached to a GitHub release:
```{r}
library(piggyback)
pb_download("iris2.tsv.gz",
repo = "cboettig/piggyback-tests",
tag = "v0.0.1",
dest = tempdir())
#> ℹ Downloading "iris2.tsv.gz"...
#> |======================================================| 100%
fs::dir_tree(tempdir())
#> /tmp/RtmpWxJSZj
#> └── iris2.tsv.gz
```
Downloading from private repos or uploading to any repo requires authentication,
specifically a GitHub Personal Access Token (PAT). This can be stored as a
[gh::gh_token()](https://usethis.r-lib.org/articles/git-credentials.html#get-a-personal-access-token-pat)
or a GITHUB_PAT environment variable - for more information, see the vignette notes on
[authentication](https://docs.ropensci.org/piggyback/articles/piggyback.html#authentication).
We can also upload data to a release. Start by creating a release:
```{r}
pb_release_create(repo = "cboettig/piggyback-tests", tag = "v0.0.2")
#> ✔ Created new release "v0.0.2".
```
then upload to it:
```{r}
readr::write_tsv(mtcars, "mtcars.tsv.gz")
pb_upload("mtcars.tsv.gz", repo = "cboettig/piggyback-tests")
#> ℹ Uploading to latest release: "v0.0.2".
#> ℹ Uploading mtcars.tsv.gz ...
#> |===================================================| 100%
```
For improved performance, we can also use piggyback files with
[cloud native](https://docs.ropensci.org/piggyback/articles/cloud_native.html)
workflows to query data without downloading it first.
## Motivations
A brief video overview presented as part of Tan Ho's [RStudioConf2022 talk](https://www.youtube.com/watch?v=wzcz4xNGeTI&t=655s):
https://github.com/ropensci/piggyback/assets/38083823/a1dff640-1bba-4c06-bad2-feda34f47387
`piggyback` allows you to store data alongside your repository as release assets,
which helps you:
- store files larger than 50MB
- bypass the 2GB GitHub repo size limit
- avoid the [downsides](https://archive.is/3D16r) of Git LFS
- version data flexibly (by creating/uploading to a new release)
- work with public and private repositories, **for free**
For more about motivations, see this discussion of
[alternatives](https://docs.ropensci.org/piggyback/articles/alternatives.html).
## Contributing
Please note that this project is released with a
[Contributor Code of Conduct](https://ropensci.org/code-of-conduct/).
By participating in this project you agree to abide by its terms.
```{r eval=TRUE, include=FALSE}
codemeta::write_codemeta()
```
[](https://ropensci.org)