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https://github.com/russelljjarvis/forestogram

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Host: GitHub
URL: https://github.com/russelljjarvis/forestogram
Owner: russelljjarvis
Created: 2022-06-02T01:33:47.000Z (over 2 years ago)
Default Branch: main
Last Pushed: 2022-07-01T23:39:00.000Z (over 2 years ago)
Last Synced: 2024-06-11T17:35:44.375Z (5 months ago)
Language: Jupyter Notebook
Size: 51.3 MB
Stars: 0
Watchers: 4
Forks: 2
Open Issues: 5
Metadata Files:
- Readme: README.md

Awesome Lists containing this project

README

        


  Sonic Forest



![example workflow](https://github.com/russelljjarvis/ForestOGram/actions/workflows/python-app.yml/badge.svg)

ForestOGram  intends to be code for animal identification and sound source classification in the Mauritius and Réunion forest. ForestOGram also intends to supply methods for building a fauna vocalisation dataset pertaining to the forests of the Mauritius and Réunion island regions.

## Getting Started

```

git clone https://github.com/russelljjarvis/ForestOGram

cd ForestOGram

sudo $(which pip) install -e .

cd ..

```

Or

```

git clone https://github.com/russelljjarvis/ForestOGram

cd ForestOGram

sudo $(which python) setup.py install

cd ..

```

![image](https://user-images.githubusercontent.com/7786645/173751900-211a8a66-0d8f-422b-ac66-5a18231ffc7a.png)

# Data Descriptors:

10 native birds, possibly 2 bats. 3 alien birds.

2 bats: a fruit bat and an insect hunting bat.

Main endemics/natives:

1. [Pink Pigeon](https://xeno-canto.org/species/Nesoenas-mayeri) - _Nesoenas mayeri_

2. [Mauritius Bulbul](https://xeno-canto.org/species/Hypsipetes-olivaceus) - _Hypsipetes olivaceus_

3. [Echo Parakeet](https://xeno-canto.org/species/Psittacula-eques) - _Psittacula eques_

4. [Cuckoo Shrike](https://xeno-canto.org/species/Lalage-typica) - _Lalage typica_

5. [Mauritius Kestrel](https://xeno-canto.org/species/Falco-punctatus) - _Falco punctatus_

6.  [Mascarene paradise flycatcher](https://xeno-canto.org/species/Terpsiphone-bourbonnensis) - _Terpsinophone Bourbonensis_

7. [Reunion Grey White-eye](https://xeno-canto.org/species/Zosterops-borbonicus) - _Zosterops borbonicus_

Occasional endemics/natives:

8. [White-tailed Tropicbird](https://xeno-canto.org/species/Phaethon-lepturus) - _Phaeton lepturis_

9. [Mascarene Swiftlet](https://xeno-canto.org/species/Aerodramus-francicus) - _Aerodramus francicus_

10. [White-throated needletail](https://xeno-canto.org/species/Hirundapus-caudacutus) - _Hirundapus caudacutus_

Bats (where to get audio?)

1. [Mauritian flying fox](https://en.wikipedia.org/wiki/Mauritian_flying_fox) - _Pteropus niger_

2. [Mauritian tomb bat](https://en.wikipedia.org/wiki/Mauritian_tomb_bat) -  _Taphozous mauritianus_

Alien:

1. [Red-whiskered bulbul](https://xeno-canto.org/explore?query=Pycnonotus%20jocosus) - Pycnonotus jocosus

2. [Rose-ringed Parakeet](https://xeno-canto.org/species/Psittacula-krameri) - _Psittacula krameri_

3. [Malagasy turtle dove](https://xeno-canto.org/species/Nesoenas-picturatus) - _Nesoenas picturatus_

| Training data                  | Testing/Validation Data   | Prediction data |

| -----------                    | ----------- | ----------- |

| isolated segments high quality | arbitrary length/quality? segmented/unsegmented?  | Deliberately mixed faint sources, noise, foresets sounds poor quality |

| can be safely automated? | need data cuts to be verified by experts?  | need results to be verified by experts? |

| N>=(500, inf) | N can be ?  | N can be ? |

| Must contain a labelled target | May not contain any target species  | May not contain any target species  |