https://github.com/russelljjarvis/jit_hub

Single neuronal models encoded in python language numba speed up. Note model waveforms are returned in Neo Format and model currents and voltages are represented with quantities units.
https://github.com/russelljjarvis/jit_hub

numba numba-jit-compiler

Last synced: about 1 month ago
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Single neuronal models encoded in python language numba speed up. Note model waveforms are returned in Neo Format and model currents and voltages are represented with quantities units.

• Host: GitHub
• URL: https://github.com/russelljjarvis/jit_hub
• Owner: russelljjarvis
• License: cc0-1.0
• Created: 2020-10-15T06:15:39.000Z (about 4 years ago)
• Default Branch: neuronunit
• Last Pushed: 2021-12-22T02:30:01.000Z (about 3 years ago)
• Last Synced: 2024-10-12T18:12:06.326Z (2 months ago)
• Topics: numba, numba-jit-compiler
• Language: Jupyter Notebook
• Homepage:
• Size: 7.18 MB
• Stars: 0
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Numba/JIT reduced neuoronal models

[![All Contributors](https://img.shields.io/badge/all_contributors-2-orange.svg?style=flat-square)](#contributors-)

 

[![Build Status](https://circleci.com/gh/russelljjarvis/jit_hub/tree/neuronunit.svg?style=svg)](https://app.circleci.com/pipelines/github/russelljjarvis/jit_hub/)

[![DOI](https://zenodo.org/badge/304228004.svg)](https://zenodo.org/badge/latestdoi/304228004)

Single neuronal models encoded in python language numba speed up.

Note model waveforms are returned in Neo Format and model currents and voltages are represented with quantities units.

Models:

* Adaptive Exponential.

* [Izhikevich 2007 (not 2003).](https://github.com/OpenSourceBrain/IzhikevichModel/blob/master/numba/faster_izhikevich_model.ipynb)

* Multi Time Scale Adaptive Neuron

To install.

```

pip install jithub==0.1.0

```

or:

```

git clone -b dev https://github.com/russelljjarvis/jit_hub

sudo pip install -e .

```

[Examples](https://github.com/russelljjarvis/jit_hub/blob/neuronunit/jithub/examples/backend_test.ipynb)

## Contributors ✨

Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):

  

    
Russell Jarvis
💻 📖 🤔 🎨 🚇

    
Richard C Gerkin
💻 🤔

  

This project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. Contributions of any kind welcome!