https://github.com/rvosa/bio-phylo-xs

Bio::PhyloXS - Core Bio::Phylo modules implemented in C
https://github.com/rvosa/bio-phylo-xs

bioinformatics c computational-biology perl phylogenetics

Last synced: 2 months ago
JSON representation

Bio::PhyloXS - Core Bio::Phylo modules implemented in C

• Host: GitHub
• URL: https://github.com/rvosa/bio-phylo-xs
• Owner: rvosa
• Created: 2014-04-01T15:38:22.000Z (over 12 years ago)
• Default Branch: master
• Last Pushed: 2017-10-13T10:34:57.000Z (over 8 years ago)
• Last Synced: 2025-04-09T21:53:28.491Z (about 1 year ago)
• Topics: bioinformatics, c, computational-biology, perl, phylogenetics
• Language: C
• Homepage:
• Size: 95.7 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 4
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

          
Bio::PhyloXS - Core Bio::Phylo in XS/C

======================================

This distribution overrides some of the core modules of 

Bio::Phylo in the C programming language (technically, 

using a type of glue code called XS). Used correctly and

under the right circumstances, this can speed up a lot 

scripts by an order of magnitude or more.

Release

-------

The most recent release is:

[![DOI](https://zenodo.org/badge/18334671.svg)](https://zenodo.org/badge/latestdoi/18334671)

Requires

--------

* Bio::Phylo v0.52 or later

* The toolkit for installing XS modules, i.e. a C compiler,

  the `make` program, the right headers, etc. As a rule of

  thumb, this will not work on Windows unless you use 

  something like Cygwin. Other operating systems, such as

  Mac OSX (with the Developer Tools) and Linux are quite 

  likely to work.

Installation

------------

This package can be installed in the standard ways, e.g. 

using the `ExtUtils::MakeMaker` workflow:

    $ perl Makefile.PL

    $ make

    $ sudo make install

BUGS

----

Please report any bugs or feature requests on the GitHub bug tracker:

https://github.com/rvosa/bio-phylo-xs/issues