https://github.com/rworkflow/rcwlpipelines
A collection of pipeline recipes based on Rcwl.
https://github.com/rworkflow/rcwlpipelines
Last synced: 7 months ago
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A collection of pipeline recipes based on Rcwl.
- Host: GitHub
- URL: https://github.com/rworkflow/rcwlpipelines
- Owner: rworkflow
- Created: 2018-11-16T19:16:37.000Z (over 7 years ago)
- Default Branch: devel
- Last Pushed: 2023-11-15T16:43:31.000Z (over 2 years ago)
- Last Synced: 2024-05-09T07:53:09.632Z (about 2 years ago)
- Language: R
- Homepage: https://rcwl.org/RcwlPipelines/
- Size: 1.39 MB
- Stars: 6
- Watchers: 4
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# RcwlPipelines
The RcwlPipelines package manages a collection of Bioinformatics tools and pipeline recipes based on Rcwl. The pre-built and pre-tested tools and pipelines are highly modularized with easy customization to meet different bioinformatics data analysis needs.
## Installation
The package can be installed from Bioconductor (>= 3.9):
``` r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcwlPipelines")
# Or from github
BiocManager::install("rworkflow/RcwlPipelines")
```
## Get started
``` r
cwlUpdate()
cwlSearch("STAR")
STAR <- cwlLoad("tl_STAR")
```
## User Guide
``` r
vignette(package = "RcwlPipelines")
```