https://github.com/ryan-williams/adam-helpers

Scripts for fetching and caching ADAM builds, by version number or git SHA.
https://github.com/ryan-williams/adam-helpers

Last synced: about 2 months ago
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Scripts for fetching and caching ADAM builds, by version number or git SHA.

• Host: GitHub
• URL: https://github.com/ryan-williams/adam-helpers
• Owner: ryan-williams
• Created: 2015-08-13T18:05:17.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2019-05-04T20:04:24.000Z (over 5 years ago)
• Last Synced: 2024-10-20T07:45:21.487Z (3 months ago)
• Language: Shell
• Homepage: https://github.com/bigdatagenomics/adam
• Size: 3.91 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# adam-helpers

Scripts for fetching and caching ADAM builds, by version number or git SHA.

## Installation

* Put this repo on your `$PATH`.

* `source` [`.adam-rc`](./.adam-rc) in your `.bashrc` or equivalent.

By default, it will create `~/adams` and download ADAM releases that you select there.

### Optional Configuation

The following environment variables will configure `adam-helpers`' behavior:

* `$ADAM_HELPERS_DIR`: use a directory other than `~/adams` to store ADAM releases.

* `$ADAM_SCALA_VERSION`: defaults to `2.10`; set to `2.11` to use ADAM's Scala 2.11 releases.

  * Note: this will only work for ADAM releases, of which only one is supported at the moment (`0.17.0`).

* `$ADAM_REPO_URL`: set to a clone of the ADAM repo other than [email protected]:bigdatagenomics/adam.git, e.g. a local clone on your filesystem, to enable builds at SHAs that haven't been upstreamed yet.

## Usage

```sh

$ adam-select 0.17.0   # Download the 0.17.0 release, set $ADAM_HOME pointing to it.

$ adam-select f541584  # Clone and build ADAM from f541584, a.k.a. #754.

# Build ADAM from a branch in a local clone.

$ ADAM_REPO_URL=/path/to/my/adam/clone adam-select my-branch 

```