https://github.com/saalfeldlab/bigwarp

A tool for manual pointwise deformable registration using bigdataviewer.
https://github.com/saalfeldlab/bigwarp

Last synced: 9 days ago
JSON representation

A tool for manual pointwise deformable registration using bigdataviewer.

• Host: GitHub
• URL: https://github.com/saalfeldlab/bigwarp
• Owner: saalfeldlab
• License: gpl-2.0
• Created: 2015-07-23T13:12:36.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2025-04-01T18:30:39.000Z (23 days ago)
• Last Synced: 2025-04-01T19:40:22.970Z (23 days ago)
• Language: Java
• Size: 2.91 MB
• Stars: 27
• Watchers: 14
• Forks: 14
• Open Issues: 43
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

Awesome Lists containing this project

• awesome-janelia-software - BigWarp - Pointwise deformable 2D and 3D registration of large image data (Fiji Plugins)
• awesome-janelia-software - BigWarp - Pointwise deformable 2D and 3D registration of large image data (Fiji Plugins)

README

        
# bigwarp

[![Build Status](https://github.com/saalfeldlab/bigwarp/actions/workflows/build-main.yml/badge.svg)](https://github.com/saalfeldlab/bigwarp/actions/workflows/build-main.yml)

A tool for manual pointwise deformable registration using bigdataviewer.

If you are using this tool in your work, please do not forget to cite [John Bogovic's paper](http://ieeexplore.ieee.org/document/7493463/) where he first introduces [BigWarp](http://fiji.sc/BigWarp):

JA Bogovic, P Hanslovsky, A Wong, S Saalfeld, "Robust registration of calcium images by learned contrast synthesis", In *Biomedical Imaging (ISBI)*, 2016 IEEE 13th International Symposium on, 1123-1126,  DOI: [10.1109/ISBI.2016.7493463](https://doi.org/10.1109/ISBI.2016.7493463).

See the main [bigwarp page](http://fiji.sc/BigWarp) for details.

* [I2K 2024 workshop instructions](doc/BigWarpI2K2024.md)