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https://github.com/saalfeldlab/bigwarp

A tool for manual pointwise deformable registration using bigdataviewer.
https://github.com/saalfeldlab/bigwarp

Last synced: 2 months ago
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A tool for manual pointwise deformable registration using bigdataviewer.

Host: GitHub
URL: https://github.com/saalfeldlab/bigwarp
Owner: saalfeldlab
License: gpl-2.0
Created: 2015-07-23T13:12:36.000Z (over 9 years ago)
Default Branch: master
Last Pushed: 2024-11-07T20:22:20.000Z (2 months ago)
Last Synced: 2024-11-07T21:26:39.602Z (2 months ago)
Language: Java
Size: 2.7 MB
Stars: 27
Watchers: 15
Forks: 14
Open Issues: 40
Metadata Files:
- Readme: README.md
- License: LICENSE.txt

Awesome Lists containing this project

awesome-janelia-software - BigWarp - Pointwise deformable 2D and 3D registration of large image data (Fiji Plugins)
awesome-janelia-software - BigWarp - Pointwise deformable 2D and 3D registration of large image data (Fiji Plugins)

README

        # bigwarp

[![Build Status](https://github.com/saalfeldlab/bigwarp/actions/workflows/build-main.yml/badge.svg)](https://github.com/saalfeldlab/bigwarp/actions/workflows/build-main.yml)

A tool for manual pointwise deformable registration using bigdataviewer.

If you are using this tool in your work, please do not forget to cite [John Bogovic's paper](http://ieeexplore.ieee.org/document/7493463/) where he first introduces [BigWarp](http://fiji.sc/BigWarp):

JA Bogovic, P Hanslovsky, A Wong, S Saalfeld, "Robust registration of calcium images by learned contrast synthesis", In *Biomedical Imaging (ISBI)*, 2016 IEEE 13th International Symposium on, 1123-1126,  DOI: [10.1109/ISBI.2016.7493463](https://doi.org/10.1109/ISBI.2016.7493463).

See the main [bigwarp page](http://fiji.sc/BigWarp) for details.

* [I2K 2024 workshop instructions](doc/BigWarpI2K2024.md)