https://github.com/saeyslab/nichenetr

NicheNet: predict active ligand-target links between interacting cells
https://github.com/saeyslab/nichenetr

cell-cell-communication data-integration gene-expression intercellular-communication ligand-receptor ligand-target network-inference rna-seq single-cell-omics single-cell-rna-seq

Last synced: about 2 months ago
JSON representation

NicheNet: predict active ligand-target links between interacting cells

• Host: GitHub
• URL: https://github.com/saeyslab/nichenetr
• Owner: saeyslab
• Created: 2018-02-05T09:58:45.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2024-08-01T15:55:07.000Z (about 2 months ago)
• Last Synced: 2024-08-01T17:05:23.789Z (about 2 months ago)
• Topics: cell-cell-communication, data-integration, gene-expression, intercellular-communication, ligand-receptor, ligand-target, network-inference, rna-seq, single-cell-omics, single-cell-rna-seq
• Language: R
• Homepage:
• Size: 151 MB
• Stars: 459
• Watchers: 15
• Forks: 114
• Open Issues: 21
• Metadata Files:
  • Readme: README.Rmd

Awesome Lists containing this project

• awesome-cell-cell-communication - NicheNet - [R]- NicheNet can study intercellular communication from a computational perspective. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with a prior model that integrates existing knowledge on ligand-to-target signaling paths. (Uncategorized / Uncategorized)