https://github.com/saezlab/cellnopt
Tool for training of logic models of signalling networks using prior knowledge networks and perturbation data.
https://github.com/saezlab/cellnopt
Last synced: 7 months ago
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Tool for training of logic models of signalling networks using prior knowledge networks and perturbation data.
- Host: GitHub
- URL: https://github.com/saezlab/cellnopt
- Owner: saezlab
- Created: 2014-12-10T11:26:51.000Z (over 11 years ago)
- Default Branch: master
- Last Pushed: 2020-10-23T13:43:00.000Z (over 5 years ago)
- Last Synced: 2025-01-22T07:37:34.065Z (over 1 year ago)
- Homepage:
- Size: 8.01 MB
- Stars: 4
- Watchers: 12
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# CellNopt package collection
In support for the paper
Enio Gjerga, Panuwat Trairatphisan, Attila Gabor, Hermann Koch, Celine Chevalier, Franceco Ceccarelli, Aurelien Dugourd, Alexander Mitsos, Julio Saez-Rodriguez, **Converting networks to predictive logic models from perturbation signalling data with CellNOpt**, *Bioinformatics*, Volume 36, Issue 16, 15 August 2020, Pages 4523–4524, https://doi.org/10.1093/bioinformatics/btaa561
## Packages:
**CellNOptR:** https://github.com/saezlab/CellNOptR
**CNORode:** https://github.com/saezlab/CNORode
**CellNOpt-Feeder:** https://github.com/saezlab/CellNOpt-Feeder
**CNORProb:** https://github.com/saezlab/CNORprob
**CellNOpt-MaBoSS:** https://github.com/saezlab/CellNOptR-MaBoSS
**ShinyCNOR (Online):** https://saezlab.shinyapps.io/shinycnor/
**ShinyCNOR (GitHub):** https://github.com/saezlab/ShinyCNOR
The *CellNOoptR*, *CNORode* and the *CellNOpt-Feeder* updates have also been implemented in Bioconductor and they can be respectively found in:
**CellNOptR:** https://www.bioconductor.org/packages/release/bioc/html/CellNOptR.html
**CNORode:** https://www.bioconductor.org/packages/release/bioc/html/CNORode.html
**CNORfeeder:** https://www.bioconductor.org/packages/release/bioc/html/CNORfeeder.html
## License
Distributed under the GPLv3 License. See accompanying file LICENSE.txt or copy at: http://www.gnu.org/licenses/gpl-3.0.html
## Website
CellNOpt website: http://www.cellnopt.org