https://github.com/saezlab/cellnoptr-maboss
CellNOptR with MaBoSS simulation
https://github.com/saezlab/cellnoptr-maboss
Last synced: over 1 year ago
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CellNOptR with MaBoSS simulation
- Host: GitHub
- URL: https://github.com/saezlab/cellnoptr-maboss
- Owner: saezlab
- License: gpl-3.0
- Created: 2017-06-06T08:11:40.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2020-02-13T14:16:45.000Z (over 6 years ago)
- Last Synced: 2025-01-22T07:37:34.172Z (over 1 year ago)
- Language: R
- Size: 1.63 MB
- Stars: 2
- Watchers: 7
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
CellNOptR-MaBoSS
=========
[](https://travis-ci.org/saezlab/CellNOptR)
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with a stochastic simulator.
- Please visit [CellNOptR](https://saezlab.github.io/CellNOptR/) for details about the project (references, news, ...)
## Installation:
Here CellNOptR-MaBoSS has been implemented within the CellNOptR package. Before starting, make sure you have installed the latest version of R. For more information and download of R, please refer to [R project page](http://www.r-project.org/) . For more information about how to install R packages, please refer to [Installing packages](http://cran.r-project.org/doc/manuals/R-admin.html#Installing-packages).
These packages rely on several Bioconductor package (e.g., RBGL, graph, methods, etc.). As an example, you can
install RGBL package by typing:
```
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBGL")
```
### Installation from GitHub
Using the `devtools` package you can install the latest version from the GitHub repository:
```
if(!require("devtools")) install.packages("devtools") # installs devtools package if not already installed
devtools::install_github("saezlab/CellNOptR-MaBoSS")
```
### Example
An example about how to run CellNOptR-MaBoSS is provided [here](https://github.com/saezlab/CellNOptR-MaBoSS/tree/toy_example).
## Feedbacks, bug reports, features
Feedbacks and bugreports are always very welcomed!
Please use the Github issue page to report bugs or for questions: https://github.com/saezlab/CellNOptR/issues.
Many thanks!