https://github.com/saezlab/liverx
Analysis of liver proteomics data from Aebersold lab
https://github.com/saezlab/liverx
Last synced: 5 months ago
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Analysis of liver proteomics data from Aebersold lab
- Host: GitHub
- URL: https://github.com/saezlab/liverx
- Owner: saezlab
- Created: 2015-06-08T10:13:53.000Z (about 11 years ago)
- Default Branch: master
- Last Pushed: 2017-02-09T09:11:12.000Z (over 9 years ago)
- Last Synced: 2025-04-01T12:21:51.707Z (over 1 year ago)
- Language: Python
- Homepage: http://biorxiv.org/content/early/2016/05/12/051508
- Size: 30.2 MB
- Stars: 3
- Watchers: 5
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# LiverX mouse proteomics
These scripts correspond to the analysis of the paper:
[Terfve, C., Sabidó, E., Wu, Y., Gonçalves, E., Choi, M., Vaga, S., Vitek, O., Saez-Rodriguez, J., Aebersold, R., 2017. System-Wide Quantitative Proteomics of the Metabolic Syndrome in Mice: Genotypic and Dietary Effects. J. Proteome Res. 16, 831–841.](http://dx.doi.org/10.1021/acs.jproteome.6b00815)
### Folders description
+ data: Mass-spectometry data-sets processed my MSstats
+ files: Analysis output and files required for the analysis, e.g filtered String network
+ reports: All analysis plots
+ src/liverx: Python scripts for general anlaysis and R script to run BioNet + Heinz active module analysis