https://github.com/saezlab/recon3d_bigg

https://github.com/saezlab/recon3d_bigg

Last synced: over 1 year ago
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• Host: GitHub
• URL: https://github.com/saezlab/recon3d_bigg
• Owner: saezlab
• License: gpl-3.0
• Created: 2021-12-17T13:41:16.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2023-04-04T13:37:40.000Z (over 3 years ago)
• Last Synced: 2025-01-22T07:37:40.769Z (over 1 year ago)
• Language: Jupyter Notebook
• Size: 3.74 MB
• Stars: 1
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Support: support/HMDB_IDs.txt

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README

          
# recon3D_BIGG

preprocessing of recon3D to make it into a format suitable for ocean and cosmos analysis.

Main script is Recon3DBIGG_to_df.R to extract relevant enzyme-substrate information and format them in a causal represenation.