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https://github.com/sahirbhatnagar/manhattanly

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Host: GitHub
URL: https://github.com/sahirbhatnagar/manhattanly
Owner: sahirbhatnagar
License: other
Created: 2016-05-30T02:05:32.000Z (over 8 years ago)
Default Branch: master
Last Pushed: 2021-05-12T03:31:43.000Z (over 3 years ago)
Last Synced: 2024-10-28T17:24:33.172Z (3 months ago)
Language: R
Homepage: http://sahirbhatnagar.com/manhattanly
Size: 11.4 MB
Stars: 60
Watchers: 5
Forks: 17
Open Issues: 7
Metadata Files:
- Readme: README.md
- License: LICENSE

Awesome Lists containing this project

jimsghstars - sahirbhatnagar/manhattanly - (R)

README

        
[![R-CMD-check](https://github.com/sahirbhatnagar/manhattanly/workflows/R-CMD-check/badge.svg)](https://github.com/sahirbhatnagar/manhattanly/actions)

[![Downloads](https://cranlogs.r-pkg.org/badges/grand-total/manhattanly?color=green)](https://www.r-pkg.org/pkg/manhattanly)

[![CRAN](https://www.r-pkg.org/badges/version/manhattanly?color=blue)](https://cran.r-project.org/package=manhattanly)

[![Lifecycle:maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)

[![Codecov test coverage](https://codecov.io/gh/sahirbhatnagar/manhattanly/branch/master/graph/badge.svg)](https://codecov.io/gh/sahirbhatnagar/manhattanly?branch=master)

# manhattanly

The goal of manhattanly is to create interactive manhattan, Q-Q and volcano plots

![](https://i.imgur.com/n88LCky.gif)

## Installation

You can install `manhattanly` from [CRAN](https://cran.r-project.org/package=manhattanly):

```R

install.packages("manhattanly")

```

Alternatively, you can install the development version of `manhattanly` from [GitHub](https://github.com/sahirbhatnagar/manhattanly) with:

```R

install.packages("devtools")

devtools::install_github("sahirbhatnagar/manhattanly", build_vignettes = TRUE)

```

## Vignette

See the [online vignette](https://sahirbhatnagar.com/manhattanly/) for example usage of the functions.

## Credit

This package is inspired by the [`qqman`](https://github.com/stephenturner/qqman) R package. The pre-processing of the data in the `manhattanly` package is based on the `qqman::manhattan` and `qqman::qq` functions. 

The splitting of the tasks into data pre-processing and plot rendering is inspired by the [`heatmaply`](https://github.com/talgalili/heatmaply) R package.

## Related Work

* [`qqman`](https://github.com/stephenturner/qqman)

* [`D3ManhattanPlots`](https://github.com/nstrayer/D3ManhattanPlots)

## Contact

* Issues: 

* Pull Requests: 

* e-mail: 

## Latest news

You can see the most recent changes to the package in the [NEWS.md file](https://github.com/sahirbhatnagar/manhattanly/blob/master/NEWS.md)

## Code of Conduct

Please note that this project is released with a [Contributor Code of Conduct](https://sahirbhatnagar.com/manhattanly/CONDUCT.html). By participating in this project you agree to abide by its terms.