https://github.com/saketkc/sklearn-hogsvd

Scikit-learn compatible python implementation of HO-GSVD
https://github.com/saketkc/sklearn-hogsvd

Last synced: 24 days ago
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Scikit-learn compatible python implementation of HO-GSVD

• Host: GitHub
• URL: https://github.com/saketkc/sklearn-hogsvd
• Owner: saketkc
• License: bsd-3-clause
• Created: 2019-01-13T00:28:29.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2019-12-15T06:12:57.000Z (almost 5 years ago)
• Last Synced: 2023-10-20T22:57:12.915Z (about 1 year ago)
• Language: Python
• Homepage:
• Size: 54.7 KB
• Stars: 4
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

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README

        
.. -*- mode: rst -*-

|Travis|_  |ReadTheDocs|_

.. |Travis| image:: https://travis-ci.org/saketkc/sklearn-hogsvd.svg?branch=master

.. _Travis: https://travis-ci.org/saketkc/sklearn-hogsvd

.. |ReadTheDocs| image:: https://readthedocs.org/projects/sklearn-hogsvd/badge/?version=latest

.. _ReadTheDocs: https://sklearn-hogsvd.readthedocs.io/en/latest/?badge=latest

sklhogsvd - Higher order generalized singular value decomposition 

=================================================================

.. _scikit-learn: https://scikit-learn.org

**sklhogsvd** is a ``scikit-learn`` compatible python package to perform

higher order generalized singular value decomposition (HOGSVD) as described

in [Ponnapalli2011]_ with an additional support for ensuring

orthogonality in the "arraylet" space.

- The orthogonalization trick is summarized in the PDF `here `_.

- A poster demonstrating its utility in finding orthologous genes (based on expression) is `here `_. 

- A work in progress writeup is `here `_.

`Demo notebook  <./notebooks/demo.ipynb>`_.

.. [Ponnapalli2011] Ponnapalli, S.P., Saunders, M.A., Van Loan, C.F., and Alter, O. (2011). A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms. PLoS ONE 6, e28072. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0028072

.. _documentation: https://sklearn-hogsvd.readthedocs.io/en/latest/quick_start.html