https://github.com/samply/exliquid
EXLIQUID Dashboard Prototype
https://github.com/samply/exliquid
Last synced: 3 months ago
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EXLIQUID Dashboard Prototype
- Host: GitHub
- URL: https://github.com/samply/exliquid
- Owner: samply
- Created: 2021-11-29T13:28:59.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2022-07-15T09:55:09.000Z (almost 3 years ago)
- Last Synced: 2024-12-30T07:14:12.806Z (5 months ago)
- Language: Shell
- Size: 7.81 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# EXLIQUID Dashboard Prototype
## Usage
From the project directory:
* start Blaze with `docker compose up`
* encode the CQL library `base64 < data/exliquid.cql` and put it into the library resource in `data/metadata.json`
* import data with `blazectl upload --server http://localhost:8080/fhir data`
* evaluate the measure with the dashboard table as result with `./evaluate.sh`
The table will output as CSV and should look like this:
| Diagnosis | Sample Type | Count |
|:----------|:-----------------------------|------:|
| C34.9 | blood-plasma | 2 |
| C34.9 | peripheral-blood-cells-vital | 1 |
| C50.9 | blood-plasma | 2 |
| C50.9 | peripheral-blood-cells-vital | 2 |
## Relevant Data
### Diagnoses
| Name | Code |
|:-----------|:------|
| Lung | C34.9 |
| Breast | C50.9 |
| Colorectal | C18.9 |
| Brain | |
| Skin | |
### Sample Types
| Code |
|:-----------------------------|
| blood-plasma |
| peripheral-blood-cells-vital |