https://github.com/samthiele/napari-hippo

A large and somewhat ugly plugin for viewing and analysing hyperspectral data in Napari
https://github.com/samthiele/napari-hippo

gui-application hyperspectral hyperspectral-imaging napari napari-plugin python

Last synced: 4 days ago
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A large and somewhat ugly plugin for viewing and analysing hyperspectral data in Napari

• Host: GitHub
• URL: https://github.com/samthiele/napari-hippo
• Owner: samthiele
• License: mit
• Created: 2024-01-29T14:59:21.000Z (8 months ago)
• Default Branch: main
• Last Pushed: 2024-09-17T07:28:55.000Z (16 days ago)
• Last Synced: 2024-09-26T01:46:58.779Z (7 days ago)
• Topics: gui-application, hyperspectral, hyperspectral-imaging, napari, napari-plugin, python
• Language: Python
• Homepage:
• Size: 11.9 MB
• Stars: 4
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# napari-hippo

| | [![License MIT](https://img.shields.io/pypi/l/napari-hippo.svg?color=green)](https://github.com/samthiele/napari-hippo/blob/main/LICENSE) | [![PyPI](https://img.shields.io/pypi/v/napari-hippo.svg?color=green)](https://pypi.org/project/napari-hippo) | [![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-hippo)](https://napari-hub.org/plugins/napari-hippo)

| -------------------------- | ------------------------------- |--------------------|-------------------|

    

A large, slightly clumsy and hopefully powerful plugin for viewing and analysing hyperspectral data in Napari.

![Funky screenshot of the napari-hippo GUI](screenshot.png)

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## Installation

Follow [these instructions](https://napari.org/stable/tutorials/fundamentals/installation) to first install napari. Then you can install `napari-hippo` via [pip](https://pypi.org/project/napari-hippo):

    pip install napari-hippo

## Documentation

We are in the process of building a documentation wiki for this plugin [here](https://github.com/samthiele/napari-hippo/wiki).

## Contributing

Contributions are very welcome! Please feel free to submit pull requests or tell us about your ideas (or problems) on the [discussions](https://pypi.org/project/napari-hippo) page.

## License

Distributed under the terms of the [MIT](https://github.com/samthiele/napari-hippo/blob/main/LICENSE) license,

`napari-hippo` is free and open source software.

## Issues

If you encounter any problems, please [file an issue](https://github.com/samthiele/napari-hippo/issues/new/choose) along with a detailed description.

## Citation

If you have found `napari-hippo` useful for your work, please cite:

> [Thiele, S. T., Kirsch, M., Lorenz, S., Saffi, H., El Alami, S., Contreras Acosta, I. C., ... & Gloaguen, R. (2024). Maximising the value of hyperspectral drill core scanning through real-time processing and analysis. Frontiers in Earth Science, 12, 1433662. doi: 10.3389/feart.2024.1433662](https://www.frontiersin.org/journals/earth-science/articles/10.3389/feart.2024.1433662/full)

Also note that much of the underlying functionality is provided by the

[`hylite`](https://github.com/hifexplo/hylite) python package, which should be cited as follows:

> [Thiele, S. T., Lorenz, S., et al., (2021). Multi-scale, multi-sensor data integration for automated 3-D geological mapping. Ore Geology Reviews. DOI: j.oregeorev.2021.104252 ](https://doi.org/10.1016/j.oregeorev.2021.104252)