https://github.com/samtools/tabix

Note: tabix and bgzip binaries are now part of the HTSlib project.
https://github.com/samtools/tabix

Last synced: 2 months ago
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Note: tabix and bgzip binaries are now part of the HTSlib project.

• Host: GitHub
• URL: https://github.com/samtools/tabix
• Owner: samtools
• Archived: true
• Created: 2012-03-09T01:46:15.000Z (almost 13 years ago)
• Default Branch: master
• Last Pushed: 2021-08-03T14:29:38.000Z (over 3 years ago)
• Last Synced: 2024-05-09T07:33:55.137Z (9 months ago)
• Language: C
• Homepage: https://github.com/samtools/htslib
• Size: 143 KB
• Stars: 91
• Watchers: 22
• Forks: 40
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • Changelog: ChangeLog

Awesome Lists containing this project

• Awesome-Bioinformatics - tabix - Table file index. [ [paper-2011](https://pubmed.ncbi.nlm.nih.gov/21208982) ] (Data Processing / Command Line Utilities)
• top-life-sciences - **samtools/tabix** - 08-03 14:29:38 | (Ranked by starred repositories)

README

        
The code in this repository is deprecated and we do not advise its use

---

This legacy repository contains early development on the tabix and

bgzip commands, tabix language bindings, and various associated code.

This repository is now archived and of historical interest only.

Most of these items are now superseded by improved versions elsewhere:

* The `tabix` and `bgzip` commands are at https://github.com/samtools/htslib

* The Java implementation is included in https://github.com/samtools/htsjdk

  (see _src/main/java/htsjdk/tribble/readers/TabixReader.java_)

* The Perl binding is superseded by https://github.com/Ensembl/Bio-DB-HTS

  (see in particular `Bio::DB::HTS::Tabix`)

* The Python binding is at https://github.com/slowkow/pytabix

* The tabix file format is described at https://github.com/samtools/hts-specs