https://github.com/samuell/fastxviz

Small utility to print distribution of sequence/read lengths in fastq files
https://github.com/samuell/fastxviz

Last synced: about 2 months ago
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Small utility to print distribution of sequence/read lengths in fastq files

• Host: GitHub
• URL: https://github.com/samuell/fastxviz
• Owner: samuell
• License: mit
• Created: 2024-03-25T10:25:02.000Z (9 months ago)
• Default Branch: main
• Last Pushed: 2024-04-02T10:05:29.000Z (9 months ago)
• Last Synced: 2024-04-03T11:00:54.396Z (9 months ago)
• Language: Go
• Size: 32.2 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
FastXViz

========

Plot read length distribution from FASTA or FastQ files, in .pdf or .png

format.

## Install

Copy the binary corresponding to your operating system from the latest release.

## Example usage

```bash

./fastxviz -in reads.fq -out readlengths.png

```

This will result in a plot like the one below:

## Example plot

![Example plot](exampleplot.png)

## Acknowledgements

Hat tip to the [gonum plot package](https://github.com/gonum/plot) which this

tool relies heavily upon.