https://github.com/samuell/galaxy_semwebtools

Import data into Galaxy by using a querying an (external) SPARQL endpoint
https://github.com/samuell/galaxy_semwebtools

Last synced: about 2 months ago
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Import data into Galaxy by using a querying an (external) SPARQL endpoint

• Host: GitHub
• URL: https://github.com/samuell/galaxy_semwebtools
• Owner: samuell
• Created: 2012-11-16T14:42:18.000Z (about 12 years ago)
• Default Branch: master
• Last Pushed: 2012-11-21T17:48:10.000Z (about 12 years ago)
• Last Synced: 2024-10-08T20:05:17.241Z (3 months ago)
• Language: Python
• Size: 164 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Semantic Web Tools for Galaxy #

## SPARQL Import tool ##

This [Galaxy (bioinformatics web portal)](http://galaxyproject.org/) toolkit currently just contains a tool that enables to specify an URL to a SPARQL endpoint, and a SPARQL query, and to save the returned data in tabular format, for further processing in Galaxy's tools.

## Installation ##

1. Create a folder "semweb_tools" under [galaxy_root]/tools/ and add these files.

2. Add the following section right under the starting <toolbox> tag in [galaxy_root]/tool_conf.xml:

````

    

        

    

````

## Change log ##

* 2012-11-16: Now works properly (at least for my simple test case)!

* 2012-11-16: Created today, still under heavy development!