https://github.com/samuell/geneidconvert

MediaWiki extension to convert from Ensembl IDs to other ID types, via Ensembl REST API.
https://github.com/samuell/geneidconvert

Last synced: about 2 months ago
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MediaWiki extension to convert from Ensembl IDs to other ID types, via Ensembl REST API.

• Host: GitHub
• URL: https://github.com/samuell/geneidconvert
• Owner: samuell
• Created: 2013-05-31T12:59:56.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2014-03-25T20:31:05.000Z (almost 11 years ago)
• Last Synced: 2024-10-08T20:07:22.022Z (3 months ago)
• Language: PHP
• Size: 168 KB
• Stars: 1
• Watchers: 3
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
A Simple MediaWiki extension that converts from Ensembl Gene ID to 

desired target gene ID type, by using the CrossRef endpoint of the

new Ensembl REST API.

Author: Samuel Lampa - [email protected]

Created Date: 2013-05-31

 

More info on the REST API Here: http://beta.rest.ensembl.org

Installation

------------

- Place this file into a folder extensions/GeneIdConvert in your

   wiki folder.

- Add the following line to your LocalSettings.php file:

 

````

require_once("$IP/extensions/GeneIdConvert/GeneIdConvert.php");

````

Usage

------------

Example usage of the extension within a MediaWiki article:

````

{{ #geneidconv: ENSG00000157764 | EntrezGene }}

````

... where the first field is the source ID (in Ensembl ID format) 

and the second field is the target ID type.

A few of the avaible options for the target ID (as of 

writing this) can be found below (please note that the lower/upper-

casing might be important):

- OTTG

- ArrayExpress

- EntrezGene

- HGNC

- MIM_GENE

- UniGene

- Uniprot_genename

- WikiGene