https://github.com/samuell/nfproviz

A small tool to parse experimental BioObject Component output from Nextlfow
https://github.com/samuell/nfproviz

Last synced: about 2 months ago
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A small tool to parse experimental BioObject Component output from Nextlfow

• Host: GitHub
• URL: https://github.com/samuell/nfproviz
• Owner: samuell
• License: apache-2.0
• Created: 2023-08-26T15:32:50.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2023-08-26T15:38:25.000Z (over 1 year ago)
• Last Synced: 2024-10-14T15:45:01.328Z (3 months ago)
• Language: Python
• Size: 8.79 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# NF-Pro(v)Viz

A small tool to parse experimental BioObject Component output from Nextflow,

worked on in [this PR](https://github.com/nextflow-io/nf-prov/pull/3), into an

HTML report with a plotted DAG (via GraphViz)

## Requirements

- Python 3.6+ (Needs to support f-strings)

- The [GraphViz](https://graphviz.org/) dot command, for generating the graph.

## Installation

```bash

git clone https://github.com/samuell/nfproviz.git

cd nfproviz

```

## Usage

```bash

python nfproviz.py -i bco.json -o bco.html

```

For shortened step/file paths:

```bash

python nfproviz.py -s -i bco.json -o bco.html

```

For even more shortened step/file paths:

```bash

python nfproviz.py -ss -i bco.json -o bco.html

```

For horizontal graph:

```bash

python nfproviz.py -hg -i bco.json -o bco.html

```