https://github.com/sandyrogers/ena-portal-ptarmigan

TextUI tool to help navigate the ENA Portal API, construct query URLs, and fetch nucleotide metadata
https://github.com/sandyrogers/ena-portal-ptarmigan

api-client bioinformatics embl-ebi genomics tui

Last synced: about 2 months ago
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TextUI tool to help navigate the ENA Portal API, construct query URLs, and fetch nucleotide metadata

• Host: GitHub
• URL: https://github.com/sandyrogers/ena-portal-ptarmigan
• Owner: SandyRogers
• Created: 2024-06-10T15:48:06.000Z (11 months ago)
• Default Branch: main
• Last Pushed: 2024-06-11T08:36:18.000Z (11 months ago)
• Last Synced: 2025-01-07T10:12:30.988Z (4 months ago)
• Topics: api-client, bioinformatics, embl-ebi, genomics, tui
• Language: Python
• Homepage: https://www.ebi.ac.uk/ena
• Size: 3.22 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# ENA PorTal PTarmigan ("ptpt")

A Textual User Interface for the [ENA Portal API](https://www.ebi.ac.uk/ena/portal/api/).

This TUI app makes it easier to build ENA Portal API Queries, by loading the available result types, search fields, and return fields into an interface.

![Screenshot of ptpt interface](assets/screenshot.png)

## Install

1. Download the appropriate binary (MacOS or Linux) from [releases](https://github.com/SandyRogers/ena-portal-ptarmigan/releases)

2. `mv ptpt-* ptpt` 

3. `chmod +x ptpt`

## Run it

`./ptpt`

## Dev setup

1. Install [Poetry](https://python-poetry.org)

2. `poetry self add poetry-pyinstaller-plugin`

3. `poetry install`

### What is a Ptarmigan?

[Let me google that for you](https://www.rspb.org.uk/birds-and-wildlife/ptarmigan)