https://github.com/sarahbeecroft/alphafold_container
Containerised version of Alphafold to run with Singularity
https://github.com/sarahbeecroft/alphafold_container
Last synced: 2 months ago
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Containerised version of Alphafold to run with Singularity
- Host: GitHub
- URL: https://github.com/sarahbeecroft/alphafold_container
- Owner: SarahBeecroft
- Created: 2022-08-29T07:40:48.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2022-09-12T07:43:19.000Z (over 2 years ago)
- Last Synced: 2025-01-22T11:43:41.464Z (4 months ago)
- Language: Dockerfile
- Size: 14.6 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Quick start guide
## Do I need to build the container from scratch?
Nope, if you have Singularity installed (and loaded if that's relevant), you can just pull the container with
`singularity pull docker://quay.io/sarahbeecroft9/alphafold:latest`
## What if I want to build the container for some reason?
The you can do the following on a machine where you can use sudo, and you've got Docker installed
```
git clone https://github.com/SarahBeecroft/alphafold_container.git
cd alphafold_container
sudo docker build -f docker/Dockerfile -t alphafold .
```
## How can I push the build to quay.io?
Follow these instructions
https://docs.quay.io/solution/getting-started.html
Then you can pull down with Singularity or Docker anytime!
See the Topaz.sh script for running the container on Topaz.
Alphafold databases available on /group/data/alphafold (pre-Setonix) or /software/references/alphafold (Setonix)