https://github.com/sarahbeecroft/fastgenomics
Port of MDNF to Pawsey
https://github.com/sarahbeecroft/fastgenomics
Last synced: 2 months ago
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Port of MDNF to Pawsey
- Host: GitHub
- URL: https://github.com/sarahbeecroft/fastgenomics
- Owner: SarahBeecroft
- Created: 2022-05-10T03:21:06.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2023-01-09T07:27:10.000Z (over 2 years ago)
- Last Synced: 2025-01-22T11:43:42.835Z (4 months ago)
- Language: Nextflow
- Size: 22.5 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: readme.md
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README
# Porting to Pawsey
Conda env to get around some missing local installs until containers or conda env built into pipeline
```
conda create -n mdnf
conda activate mdnf
mamba install -y -c bioconda nextflow=21.10.6 biobambam picard
```