https://github.com/sbesson/pnas2011
Supporting data from Besson et al., (2011) Universal rule for the symmetric division of plant cells
https://github.com/sbesson/pnas2011
Last synced: 5 months ago
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Supporting data from Besson et al., (2011) Universal rule for the symmetric division of plant cells
- Host: GitHub
- URL: https://github.com/sbesson/pnas2011
- Owner: sbesson
- Created: 2018-01-27T18:07:11.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2018-02-05T22:36:53.000Z (over 8 years ago)
- Last Synced: 2025-05-29T23:37:51.400Z (about 1 year ago)
- Language: Matlab
- Homepage: https://doi.org/10.1073/pnas.1011866108
- Size: 1.56 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
Readme
======
This repository contains data and scripts allowing to reproduce the figures of
[Universal rule for the symmetric division of plant cells](https://doi.org/10.1073/pnas.1011866108).
Prerequisites
-------------
* MATLAB version R2007a or later (tested using R2017b)
* the API allowing to read the cell structures available at
https://github.com/sbesson/plant-tissue/releases/tag/v0.1.0
Files
-----
Raw images used for performing the cell division analysis are available on request.
This repository contains:
* the results of the analysis of dividing cells for multiple systems saved as MAT files:
| File | Cell type |
|--------|----------------|
| [coleochaeteresults.mat](coleochaeteresults.mat) | Coleochaete cells |
| [quadrantcells.mat](quadrantcells.mat) | Dionaea, quadrant cells |
| [dionaea_results.mat](dionaea_results.mat) | Dionaea, triangular cells |
| [Zinnia1_5_22_A_ssd_010-treated.mat](Zinnia1_5_22_A_ssd_010-treated.mat) | Zinnia cells |
| [Microsorum1_1-treated.mat](Microsorum1_1-treated.mat) - [Microsorum5_1-treated.mat](Microsorum5_1-treated.mat) | Microsorum cells |
* the scripts used to produce the figures and movies of the publication
| Script | Paper resource |
|--------|----------------|
| [Figure3A.m](Figure3A.m) | [Figure 3, panel A](http://www.pnas.org/content/108/15/6294#F3) |
| [Figure3B.m](Figure3B.m) | [Figure 3, panel B](http://www.pnas.org/content/108/15/6294#F3) |
| [Figure3B.m](Figure3C.m) | [Figure 3, panel C](http://www.pnas.org/content/108/15/6294#F3) |
| [Figure6.m](Figure6.m) | [Figure 6](http://www.pnas.org/content/108/15/6294#F6) |
| [MovieS1.m](MovieS3.m) | [Movie S1](http://www.pnas.org/content/108/15/6294/tab-figures-data) |
| [MovieS3.m](MovieS3.m) | [Movie S3](http://www.pnas.org/content/108/15/6294/tab-figures-data) |