https://github.com/sbg/tidycwl

Tidy Common Workflow Language Tools and Workflows
https://github.com/sbg/tidycwl

bioinformatics-pipeline common-workflow-language sevenbridges tidyverse

Last synced: 29 days ago
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Tidy Common Workflow Language Tools and Workflows

• Host: GitHub
• URL: https://github.com/sbg/tidycwl
• Owner: sbg
• Created: 2019-10-28T13:27:58.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2022-10-26T21:23:39.000Z (about 2 years ago)
• Last Synced: 2023-11-24T00:27:22.421Z (about 1 year ago)
• Topics: bioinformatics-pipeline, common-workflow-language, sevenbridges, tidyverse
• Language: Common Workflow Language
• Homepage: https://sbg.github.io/tidycwl/
• Size: 938 KB
• Stars: 8
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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• jimsghstars - sbg/tidycwl - Tidy Common Workflow Language Tools and Workflows (Common Workflow Language)

README

        
# tidycwl

[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental-1)

[![CRAN Version](https://www.r-pkg.org/badges/version/tidycwl)](https://cran.r-project.org/package=tidycwl)

[![Travis build status](https://app.travis-ci.com/sbg/tidycwl.svg?branch=master)](https://app.travis-ci.com/github/sbg/tidycwl)

[![Downloads from the RStudio CRAN mirror](https://cranlogs.r-pkg.org/badges/grand-total/tidycwl)](https://cran.r-project.org/package=tidycwl)

Read, parse, and visualize Common Workflow Language (CWL) workflows.

The [Common Workflow Language](https://www.commonwl.org/) is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or YAML and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their Shiny applications, and export them as HTML files or static images.

Check out the [vignette](https://sbg.github.io/tidycwl/articles/tidycwl.html) for a quick introduction.

## Installation

To download and install `tidycwl` from CRAN:

```r

install.packages("tidycwl")

```

Or try the development version on GitHub:

```r

# install.packages("remotes")

remotes::install_github("sbg/tidycwl")

```

## Copyright

© 2020 Seven Bridges Genomics, Inc. All rights reserved.

This project is licensed under the GNU Affero General Public License v3.