https://github.com/sccn/nemar-pipeline

https://github.com/sccn/nemar-pipeline

Last synced: over 1 year ago
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• Host: GitHub
• URL: https://github.com/sccn/nemar-pipeline
• Owner: sccn
• Created: 2022-03-09T21:41:27.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2024-12-12T14:32:47.000Z (over 1 year ago)
• Last Synced: 2025-04-01T13:37:59.907Z (over 1 year ago)
• Language: MATLAB
• Size: 1.74 MB
• Stars: 5
• Watchers: 5
• Forks: 2
• Open Issues: 10
• Metadata Files:
  • Readme: README.md

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README

          
# NEMAR-pipeline

Code for NEMAR pipeline to generate visualization and data quality report. Refactored https://github.com/sccn/app-test-NEMAR

# Using your own function

- Make sure you have an Expanse

- Clone the repository

There are 2 types of pipelines

- Pipelines that process single EEG datasets

- Pipelines that process an entire BIDS repo

process_all_custom_pipelines

  - Take a BIDS dataset

  - Take a function name to process the data

  

Allow to use the processed directory instead of the raw data folder

  

3 modes

  - Process single EEG dataset

  - Process all EEG datasets of a subject

  - Process a STUDY

  - Process the BIDS folder

The function should write a JSON or SVG file into the same folder as the EEG file or the same folder as the derivative BIDS repo 

- At the same time

options - options to the function

Parameters

# Inclusion to the NEMAR website

- Send the name of the file to Dung

- If a plot, send the title

    - associated titled

    - file name

- If a JSON file, for each entry send. No array allowed.

    - title 

    - field

    - description