https://github.com/schlosslab/opf

Scripts and tutorials for creating opfs from metagenomic data
https://github.com/schlosslab/opf

Last synced: 8 months ago
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Scripts and tutorials for creating opfs from metagenomic data

• Host: GitHub
• URL: https://github.com/schlosslab/opf
• Owner: SchlossLab
• License: gpl-2.0
• Created: 2013-07-19T15:07:38.000Z (almost 13 years ago)
• Default Branch: master
• Last Pushed: 2015-10-14T16:20:45.000Z (over 10 years ago)
• Last Synced: 2023-05-15T12:35:16.693Z (about 3 years ago)
• Language: Python
• Size: 2.43 MB
• Stars: 1
• Watchers: 6
• Forks: 1
• Open Issues: 24
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
opf

===

Scripts and tutorials for creating opfs from metagenomic data. If you encounter a bug, please file an issue https://github.com/kdiverson/opf/issues

Please see the wiki page for instructions https://github.com/kdiverson/opf/wiki

Terms

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countfile -> the first column is a list of all the genes in the dataset. The second column is the sum across all datasets and the remaining columns are the counts within each group