https://github.com/sciencegenome/bacdive-analyzer
rust driven complete bacdive analyzer for microbial informatics
https://github.com/sciencegenome/bacdive-analyzer
bacdive bacterial-database bacterial-genomes bacterial-genomics bioinformatics dsmz genome-analysis genome-annotation leipzig-data
Last synced: 2 months ago
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rust driven complete bacdive analyzer for microbial informatics
- Host: GitHub
- URL: https://github.com/sciencegenome/bacdive-analyzer
- Owner: sciencegenome
- License: mit
- Created: 2025-01-18T18:56:29.000Z (4 months ago)
- Default Branch: main
- Last Pushed: 2025-02-14T07:07:51.000Z (3 months ago)
- Last Synced: 2025-02-14T08:21:57.438Z (3 months ago)
- Topics: bacdive, bacterial-database, bacterial-genomes, bacterial-genomics, bioinformatics, dsmz, genome-analysis, genome-annotation, leipzig-data
- Language: Rust
- Homepage:
- Size: 4.7 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# bacdive-analyzer
- rust driven complete bacdive analyzer.
- analyses all the bacdive data and the bacdive function download the coresponding bacdive pages for the offline viewing.
- id, isolation, strain, type_strain download the corresponding webpages from the bacdive.
- bacdive-web allows you to download a multitude of webpages for the corresponding ids.
```
cargo build
```
```
➜ bacdive-analyzer git:(main) ✗ ./target/debug/bacdive-analyzer -h
prepairing the json for the bacdive
Usage: bacdive-analyzer
Commands:
id search for the specific species in the bacdive to get their strain and associated information
species prepare the data for the backhand api integration
designation please provide the id of the species that you want to look,
strain please provide the species that need to be searched
strain-type please provide the type for the bacdive that you want to look
bacdive-web please provide the bacdiveid for the link to prepare
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help
-V, --version Print version
➜ bacdive-analyzer git:(main) ✗ ./target/debug/bacdive-analyzer bacdive-web -h
please provide the bacdiveid for the link to prepare
Usage: bacdive-analyzer bacdive-web [CSV]
Arguments:
please provide the path to the bacdive file
[CSV] this will take a text file with the ids to generate the bacdive links
Options:
-h, --help Print help
```
Gaurav Sablok