https://github.com/sciencegenome/metagenome-alignment-wasm

rust embedded approach for genome alignments to wasm web assembly
https://github.com/sciencegenome/metagenome-alignment-wasm

bioinformatics genome-analysis genome-assembly genome-browser rust-crate rustlang webassembly webassembly-lang

Last synced: 3 months ago
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rust embedded approach for genome alignments to wasm web assembly

• Host: GitHub
• URL: https://github.com/sciencegenome/metagenome-alignment-wasm
• Owner: sciencegenome
• License: mit
• Created: 2024-11-27T22:23:13.000Z (6 months ago)
• Default Branch: main
• Last Pushed: 2025-01-15T20:44:48.000Z (4 months ago)
• Last Synced: 2025-01-17T09:12:25.233Z (4 months ago)
• Topics: bioinformatics, genome-analysis, genome-assembly, genome-browser, rust-crate, rustlang, webassembly, webassembly-lang
• Language: Rust
• Homepage:
• Size: 180 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# rust-view-multi-aln

- started a webassembly approach for genomic alignments for plants and metagenomes.

- will convert this with additional svelte into a complete biowasm web assembly, so give any BAM, CRAM, SAM file and it will show the genome.

- from reads to entire genome and metagenome visualization.

- please see the last commit message and if it says compiled binary then it is completed or else still in development version.

![](https://github.com/applicativesystem/rust-view-aln-wasm/blob/main/metagenome_alignment.png)

```

cargo build

```

```

λ gauravsablok rust-view-multi-aln → λ git master* → ./target/debug/rust-view-multi-aln -h

Usage: rust-view-multi-aln 

Arguments:

    please provide the path to the alignment file

Options:

  -h, --help     Print help

  -V, --version  Print version

```

Gaurav Sablok