https://github.com/sciencegenome/pacbiohifi-fasta-converter
bash based fasta conversion of pacbiohifi reads and filtering.
https://github.com/sciencegenome/pacbiohifi-fasta-converter
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi shell shell-script
Last synced: 8 months ago
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bash based fasta conversion of pacbiohifi reads and filtering.
- Host: GitHub
- URL: https://github.com/sciencegenome/pacbiohifi-fasta-converter
- Owner: sciencegenome
- License: mit
- Created: 2024-08-17T19:32:33.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2024-08-17T19:33:57.000Z (about 1 year ago)
- Last Synced: 2025-01-24T19:37:24.297Z (9 months ago)
- Topics: bioinformatics, genome-analysis, pacbio-data, pacbio-sequencing, pacbiohifi, shell, shell-script
- Language: Shell
- Homepage:
- Size: 1.95 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# pacbiohifi-read-assimilator
- a pacbiohifi read check for the quick view of the read types and making it easy for the fasta manipulations and read extractions.
- A much faster pacbiohifi read assimilator which converts the pacbiohifi reads to the fasta and the corrresponding extractions for the assembler.
- It also writes the pacbiohifi reads indivually so that you can remove certain reads of not interest.
```
$ sh readreeder.sh
```
Gaurav Sablok \
University of Potsdam \
Potsdam,Germany