https://github.com/sciencegenome/phylogenomics-apptainer
apptainer image for complete phylogenomics and evolutionary analysis
https://github.com/sciencegenome/phylogenomics-apptainer
apptainer apptainer-container devops devops-platform devops-team high-performance-computing phylogenomics phylogenomics-bioinformatics
Last synced: 8 months ago
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apptainer image for complete phylogenomics and evolutionary analysis
- Host: GitHub
- URL: https://github.com/sciencegenome/phylogenomics-apptainer
- Owner: sciencegenome
- License: mit
- Created: 2024-09-30T20:26:28.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2024-10-17T05:54:05.000Z (12 months ago)
- Last Synced: 2025-01-14T22:26:53.436Z (9 months ago)
- Topics: apptainer, apptainer-container, devops, devops-platform, devops-team, high-performance-computing, phylogenomics, phylogenomics-bioinformatics
- Homepage:
- Size: 2.93 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# phylogenomics-apptainer
- a apptainer for the phylogenomics
- it contains all the applications combined in a single container for the phylogenomics.
- it incldues orthofinder, astral, trimal, alignmentGO, raxml and clipkit.
- all the applications required for the genome analysis and genome or gene based phylogenomics.
```
apptainer exec phylogenomics.def
Given an folder of the fasta file you can invoke the apptainer as
apptainer run phylogenomics.sif orthofinder PATH-FASTA-FOLDER
apptainer run phylogenomics.sif astral -h
apptainer run phylogenomics.sif trimal -h
apptainer run phylogenomics.sif alignmentGO -h
apptainer run clipkit -h
```
Gaurav Sablok