https://github.com/scverse/multi-condition-comparisions
Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)
https://github.com/scverse/multi-condition-comparisions
Last synced: 11 months ago
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Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)
- Host: GitHub
- URL: https://github.com/scverse/multi-condition-comparisions
- Owner: scverse
- License: bsd-3-clause
- Created: 2023-11-27T11:26:55.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-05-18T15:02:49.000Z (about 2 years ago)
- Last Synced: 2024-05-18T16:23:16.354Z (about 2 years ago)
- Language: Python
- Size: 1.34 MB
- Stars: 3
- Watchers: 2
- Forks: 2
- Open Issues: 11
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: docs/contributing.md
- License: LICENSE
Awesome Lists containing this project
README
> [!NOTE]
> The functionality developed in this repo has now been integrated into [pertpy](https://github.com/theislab/pertpy).
>
> This repo holds prototypes for a differential expression interface for scverse that has been developed at the [scverse hackathon in Cambridge, UK in November 2023](https://scverse.org/events/2023_11_hackathon/). It has now been archived as read-only.
# multi-condition-comparisions
[![Tests][badge-tests]][link-tests]
[![Documentation][badge-docs]][link-docs]
[badge-tests]: https://img.shields.io/github/actions/workflow/status/grst/multi-condition-comparisions/test.yaml?branch=main
[link-tests]: https://github.com/scverse/multi-condition-comparisons/actions/workflows/test.yml
[badge-docs]: https://img.shields.io/readthedocs/multi-condition-comparisions
Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)
## Getting started
Please refer to the [documentation][link-docs]. In particular, the
- [API documentation][link-api].
## Installation
You need to have Python 3.9 or newer installed on your system. If you don't have
Python installed, we recommend installing [Mambaforge](https://github.com/conda-forge/miniforge#mambaforge).
There are several alternative options to install multi-condition-comparisions:
1. Install the latest development version:
```bash
pip install git+https://github.com/scverse/multi-condition-comparisions.git@main
```
## Release notes
See the [changelog][changelog].
## Contact
For questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].
If you found a bug, please use the [issue tracker][issue-tracker].
## Citation
> t.b.a
[scverse-discourse]: https://discourse.scverse.org/
[issue-tracker]: https://github.com/grst/multi-condition-comparisions/issues
[changelog]: https://multi-condition-comparisions.readthedocs.io/latest/changelog.html
[link-docs]: https://multi-condition-comparisions.readthedocs.io
[link-api]: https://multi-condition-comparisions.readthedocs.io/latest/api.html