https://github.com/seabbs/covidinterventionreview

Adoption and impact of non-pharmaceutical interventions for COVID-19
https://github.com/seabbs/covidinterventionreview

covid-19 interventions openscience reproducible-research rstats

Last synced: 8 days ago
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Adoption and impact of non-pharmaceutical interventions for COVID-19

• Host: GitHub
• URL: https://github.com/seabbs/covidinterventionreview
• Owner: seabbs
• License: cc0-1.0
• Created: 2020-03-06T12:18:45.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2020-04-05T11:03:01.000Z (almost 5 years ago)
• Last Synced: 2024-12-24T03:28:04.838Z (16 days ago)
• Topics: covid-19, interventions, openscience, reproducible-research, rstats
• Language: R
• Size: 13.9 MB
• Stars: 4
• Watchers: 6
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        

# Adoption and impact of non-pharmaceutical interventions for COVID-19

This paper is now available online on Wellcome Open Research [here](https://wellcomeopenresearch.org/articles/5-59/v1)

## Usage

### Update the data

The raw data required in the article can be updated using the following:

```bash

Rscript scripts/update-raw-data.R

```

### Clean the data 

The cleaned data used in the article can be updated using the following:

```bash

Rscript scripts/update-output-data.R

```

### Generate plots

The plots used in the article can be generated using the following: 

```bash

Rscript scripts/update-plots.R

```

### Generate tables

The tables presented in the article can be generated using the following:

```bash

Rscript scripts/update-tables.R

```

### Render the article

The article can be rendered using the following

```bash

Rscript scripts/render-report.R

```