https://github.com/seabbs/seabbs

Personal repository
https://github.com/seabbs/seabbs

Last synced: 8 days ago
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Personal repository

• Host: GitHub
• URL: https://github.com/seabbs/seabbs
• Owner: seabbs
• License: mit
• Created: 2021-03-24T09:28:53.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2024-06-03T08:52:28.000Z (7 months ago)
• Last Synced: 2024-12-24T03:28:08.869Z (16 days ago)
• Size: 29.3 KB
• Stars: 3
• Watchers: 2
• Forks: 0
• Open Issues: 13
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
### Hi there 👋

##### I'm an infectious disease researcher interested in real-time analysis, forecasting, semi-mechanistic modelling, and open-source tool development.

##### NOW

- Mostly working @[**Epiforecasts**](https://github.com/epiforecasts/) (part of the **London School of Hygiene and Tropical Medicine**);

- Also supporting @[**CDC Centre for Forecast and Outbreak Analytics**](https://www.cdc.gov/forecast-outbreak-analytics/index.html);

- ⭐ Contributing to the [epinowcast community](https://epinowcast.org) developing tools and methods for current surveillance of infectious disease and preparing for future outbreaks;

- 🧻 Currently working on:

    - [If we want an estimate of the reproduction number do we need the renewal process?](https://github.com/cdcgov/Rt-without-renewal) and associated Julia modelling toolkit.

    - [Developing a workbench for real-time and outbreak infectious disease modelling](https://package.epinowcast.org/articles/model)

    - [Course materials on nowcasting, forecasting, and evaluation](https://github.com/nfidd/nfidd)

    - 😴 🔌 🐑

##### BIO

- 🏢 2024-: Assistant professor in real-time modelling of infectious disease w/ [Sebastian Funk](https://www.lshtm.ac.uk/aboutus/people/funk.sebastian) at the **London School of Hygiene and Tropical Medicine**

- 🏢 2023-: Contractor supporting the **CDC Centre for Forecast and Outbreak Analytics**

- 🏢 2020-2023: Postdoc in real-time modelling of infectious disease w/ [Sebastian Funk](https://www.lshtm.ac.uk/aboutus/people/funk.sebastian) at the **London School of Hygiene and Tropical Medicine**

- 🏢 2017-2019: Data Scientist at [Funding Circle](https://www.fundingcircle.com/uk/)

- 📜 2016-2019: [PhD](https://github.com/seabbs/thesis) at the **University of Bristol** on modelling the use of the BCG vaccine in the UK

- ⚙️ I use daily: `R`, `julia`, `stan`

- 🏗️ I like to perform analysis using novel models on interesting data and generalise those approaches into software 📦s 

- 🌍 I'm mostly active within the [**epinowcast community**](https://epinowcast.org)

- 🌱 Learning all about **Julia** and **Turing.jl** - currently wondering why in the world you would use callables.

- 📘 Reading: [Probability and random processes](https://global.oup.com/ukhe/product/probability-and-random-processes-9780198847595?cc=gb&lang=en&)

- 💬 Ping me about **statistical modelling of infectious diseases**, **real-time analysis of infectious diseases**, **estimating transmission dynamics in real-time**, and **team science opportunities**

- 📫 Reach me: [[email protected]]([email protected])

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