https://github.com/seananderson/ext-meta

Paleo marine extinction risk meta-analysis for NESCent working group
https://github.com/seananderson/ext-meta

Last synced: 12 days ago
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Paleo marine extinction risk meta-analysis for NESCent working group

• Host: GitHub
• URL: https://github.com/seananderson/ext-meta
• Owner: seananderson
• Created: 2013-07-23T18:53:14.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2015-03-11T16:55:27.000Z (over 9 years ago)
• Last Synced: 2024-10-12T01:19:41.451Z (27 days ago)
• Language: HTML
• Size: 12.3 MB
• Stars: 0
• Watchers: 5
• Forks: 1
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
The folder contains code for a meta-analysis looking at the ecological and 

environmental determinants of extinction risk for bivalves and gastropods in

the fossil record. The code was largely written by Jarrett Byrnes.

The analysis scripts call some R files in the `r` folder and some data from the

`data` folder.

To re-run the analysis, run the following in an R console:

First, install these packages if you don't have them. It's fine to re-run this 

line if you aren't sure.

    install.packages(c("ggplot2", "gridExtra", "metafor", "RColorBrewer", "AICcmodavg", "knitr", "lme4", "plyr"))

Then set your working directory to the `analysis` folder.

For example, on my computer:

    setwd("~/src/ext-meta/analysis/")

Then run these lines of code:

    source("../r/proxydata_clean_merge.R")

    source("../r/data_clean_merge.r")

    library(knitr)

    knit2html("final.Rmd")

    source("pretty_data_overview.R")

    source("plot_effect_sizes.R")