https://github.com/sebastian-gregoricchio/spacca

Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
https://github.com/sebastian-gregoricchio/spacca

chip-seq chip-seq-analysis chip-seq-callers chip-seq-data chip-seq-peaks chipseq copynumber gatk gatk4 macs macs2 mutation mutation-analysis mutations normalization somatic-indels somatic-mutations somatic-variant somatic-variants

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Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples

• Host: GitHub
• URL: https://github.com/sebastian-gregoricchio/spacca
• Owner: sebastian-gregoricchio
• License: gpl-3.0
• Created: 2023-10-25T11:01:52.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2025-10-18T12:24:17.000Z (8 months ago)
• Last Synced: 2025-10-19T07:42:56.423Z (8 months ago)
• Topics: chip-seq, chip-seq-analysis, chip-seq-callers, chip-seq-data, chip-seq-peaks, chipseq, copynumber, gatk, gatk4, macs, macs2, mutation, mutation-analysis, mutations, normalization, somatic-indels, somatic-mutations, somatic-variant, somatic-variants
• Language: Python
• Homepage:
• Size: 4.77 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
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# SPACCa [](https://sebastian-gregoricchio.github.io/SPACCa)

*Fun fact: in italian slang when something "spacca" it means that it rocks.*




## Introduction

`SPACCa` is a **S**nakemake **P**ipeline for the **A**nalyses of **C**hIP-seq data in **Ca**ncer samples.

### Citation

If you use this pipeline, please cite:







No publication associated yet. "SPACCa: a Snakemake Pipeline for the analyses of ChIP-seq data in Cancer samples. 


XYZ, Volume X, Issue X, 2023, XYZ 


DOI: XYZ











## Documentation [](https://github.com/sebastian-gregoricchio/SPACCa/wiki)

Details on the [installation](https://github.com/sebastian-gregoricchio/SPACCa/wiki/02.-Installation-and-dependencies) and [usage](https://github.com/sebastian-gregoricchio/SPACCa/wiki/05.-Peak-calling-and-normalization) of `SPACCa` can be found at the dedicated [Wiki](https://github.com/sebastian-gregoricchio/SPACCa/wiki/).





-----------------

## Package history and releases

A list of all releases and respective description of changes applied could be found [here](https://sebastian-gregoricchio.github.io/SPACCa/NEWS).

## Contact

For any suggestion, bug fixing, commentary please report it in the [issues](https://github.com/sebastian-gregoricchio/SPACCa/issues)/[request](https://github.com/sebastian-gregoricchio/SPACCa/pulls) tab of this repository.

## License

This repository is under a [GNU General Public License (version 3)](https://sebastian-gregoricchio.github.io/SPACCa/LICENSE.md/LICENSE).




#### Contributors

[![contributors](https://contrib.rocks/image?repo=sebastian-gregoricchio/SPACCa)](https://sebastian-gregoricchio.github.io/)