https://github.com/seqeralabs/wave-showcase
Examples showing how to configure Nextflow to run with Wave containers provisioning service
https://github.com/seqeralabs/wave-showcase
containers docker nextflow
Last synced: 4 months ago
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Examples showing how to configure Nextflow to run with Wave containers provisioning service
- Host: GitHub
- URL: https://github.com/seqeralabs/wave-showcase
- Owner: seqeralabs
- Created: 2022-08-27T19:21:14.000Z (almost 4 years ago)
- Default Branch: master
- Last Pushed: 2024-11-02T09:24:53.000Z (over 1 year ago)
- Last Synced: 2026-02-08T02:00:01.991Z (4 months ago)
- Topics: containers, docker, nextflow
- Language: Nextflow
- Homepage: https://seqera.io/wave/
- Size: 49.8 KB
- Stars: 21
- Watchers: 4
- Forks: 5
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# Wave containers showcase
This repository includes examples showing how to configure Nextflow
to run with the [Wave container provisioning](https://seqera.io/wave/) service.
1. [Authenticate private container repositories](example1/)
2. [Build and deliver Nextflow module containers](example2/)
3. [Build and deliver module containers to a private repository](example3/)
4. [Build a container based on Conda packages](example4/)
5. [Augment existing containers with Nextflow process resources](example5/)
6. [Run a pipeline with S3 using Wave and Fusion file system](example6/)
7. [Run nf-core/RNAseq using Conda-based containers and Fusion file system](example7/)
8. [Run a pipeline on a remote Kubernetes cluster using Wave and Fusion file system](example8)
9. [Run a pipeline with Google Batch using Fusion over Google Storage bucket](example-googlebatch)
10. [Run a pipeline with Google Kubernetes Engine using Fusion over Google Storage bucket](example-gke)
10. [Bonus: Interactive debugging of remotely executed tasks](example-bonus)
For more details check out the [Wave user documentation](https://www.nextflow.io/docs/latest/wave.html).