https://github.com/sequana/sequana-wrappers-lite

a light version of sequana-wrappers repository
https://github.com/sequana/sequana-wrappers-lite

Last synced: 7 months ago
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a light version of sequana-wrappers repository

• Host: GitHub
• URL: https://github.com/sequana/sequana-wrappers-lite
• Owner: sequana
• Created: 2025-07-22T08:56:16.000Z (11 months ago)
• Default Branch: main
• Last Pushed: 2025-07-22T16:48:46.000Z (11 months ago)
• Last Synced: 2025-08-05T06:50:13.184Z (10 months ago)
• Language: Python
• Size: 58.6 KB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# sequana-wrappers-lite

## :question: What is it 

a light version of the sequana-wrappers repository https://github.com/sequana/sequana-wrappers

## :dart: targetted audience

Sequana's developers.

The idea is that from sequana_pipetools, we can fetch this repo that will be a copy of the wrappers of sequana-wrappers without the test, documentation, large .git directory, etc

Yet, we need to make sure this is synchronised with the official wrappers, including tags.

Here we provide a simple utility update.py that fetches a tag and copy only the wrappers and environment.yaml files for you.

Only tagged version from sequana-wrappers should be included here.

From python using the update.py file provided:

    import update

    w = update.Wrapper()

    w.run("v24.8.29")

exit, and do:

    cd wrappers

    git commit  -m "Add wrapper.py files for tag v24.8.29"

    git tag v24.8.29

    git push origin main

    git push origin v24.8.29

Or even simpler, use

    python update.py --tag vX.Y.Z

and follow the instructions.

We already commited the older tag but for information and book-keeping, keep in mind the following issue. If you consider adding an older tag, this rewrite history of the original wrappers. This is not a big deal since this repo is not for developement. Yet, would be nice to have the same behaviour as the original wrappers if we do a git clone. So consider reset the HEAD to the commit of the newest tag whenever required using

    git checkout main

    git reset --hard v24.8.29 

    git push origin main --force

## 🗨️ Contacts 

Please fill an issue.