https://github.com/sequana/webapp_samplesheet

test st
https://github.com/sequana/webapp_samplesheet

Last synced: 4 months ago
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test st

• Host: GitHub
• URL: https://github.com/sequana/webapp_samplesheet
• Owner: sequana
• License: bsd-3-clause
• Created: 2024-01-10T10:05:55.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-10-24T08:19:32.000Z (over 1 year ago)
• Last Synced: 2025-04-08T01:34:32.162Z (about 1 year ago)
• Language: Python
• Size: 144 KB
• Stars: 3
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# Check My Sample Sheet

This is a streamlit application that uses Sequana (github.com/sequana/sequana) **iem** modules to check Sample Sheet from Illumina sequencers.

Running demo is here: https://check-my-sample-sheet.streamlit.app/

![Visitors](https://api.visitorbadge.io/api/visitors?path=https%3A%2F%2Fcheck-my-sample-sheet.streamlit.app%2F&countColor=%23263759)

# General Information

If you want to contribute to this web application, please provide PR here. Note, however, that the core of the application is within the Sequana project on https://github.com/sequana/sequana/, more specifically in the iem.py module.

The sanity checks implemented are based on experience and the bcl2fastq documentation v2.20

# Local instance

    git clone https://github.com/sequana/webapp_samplesheet check_my_sample_sheet

    cd check_my_sample_sheet

    # You will need to install requirements (sequana and streamlit)

    pip install --file requirements.txt

    # and should ne ready to test the appliction locally in your browser 

    streamlit run app.py