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https://github.com/sfu-db/covid19-datasets
A list of high quality open datasets for COVID-19 data analysis
https://github.com/sfu-db/covid19-datasets
covid-19 covid19 covid19-data datasets opendata
Last synced: 27 days ago
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A list of high quality open datasets for COVID-19 data analysis
- Host: GitHub
- URL: https://github.com/sfu-db/covid19-datasets
- Owner: sfu-db
- Created: 2020-05-11T22:38:35.000Z (over 4 years ago)
- Default Branch: master
- Last Pushed: 2020-10-29T03:45:05.000Z (about 4 years ago)
- Last Synced: 2024-11-06T19:54:32.785Z (3 months ago)
- Topics: covid-19, covid19, covid19-data, datasets, opendata
- Language: HTML
- Size: 13 MB
- Stars: 60
- Watchers: 9
- Forks: 32
- Open Issues: 9
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# COVID-19 - Datasets, APIs and List of Projects.
------------------
The vision of developing this repository is to have an exhaustive list of high quality datasets, API's and projects pertaining to COVID-19 which will be open to communities such as academia, research and education.
If you have an awesome dataset, API link or a project link related to COVID-19 and would like to share it with us. Please have a look at our how to [contribute page](https://github.com/sfu-db/covid19-datasets/blob/master/assets/how-to-contribute-COVID19repo.md).
# DATASETS
--------------
### TABULAR DATA
#### COVID-19 Statistics Datasets:
* [Data on COVID-19 (coronavirus) by Our World in Data (OWID)](/datasets-details/owid-COVID19.md)
* [Confirmed positive cases of COVID-19 in Ontario](/datasets-details/ontario-confirmed-covid19-dataset.md)
* [British Columbia COVID-19 cases dataset](/datasets-details/BC-COVID-19-dataset.md)
* [COVID-19 in India dataset (contains ageGroup, hostipal beds and state level details on testing)](/datasets-details/COVID-19-in-india.md)
* [NYtimes Excess Deaths during the Coronavirus Pandemic](/datasets-details/nytimes-excess-deaths.md)
* [Colombia COVID-19 Official Dataset](/datasets-details/Colombia-COVID-19-official-dataset.md)
* [ECDC-COVID-19-dataset](datasets-details/ECDC-COVID-19-dataset.md)
* [Johns Hopkins University - COVID-19 Data Repository](/datasets-details/john_hopkins.md)
* [Manitoba COVID-19 Daily Cases by Status Dataset](/datasets-details/Manitoba-COVID-19-Daily-Cases-by-Status-dataset.md)
* [Yahoo - COVID-19 dataset](/datasets-details/Yahoo_COVID-19.md)
* [Austria COVID-19 Case Data with Basemap (STC)](/datasets-details/Austria-COVID-19-Case-Data-with-Basemap-(STC).md)
* [Russia COVID-19 Case Data with Basemap (STC)](/datasets-details/Russia-COVID-19-Case-Data-with-Basemap-(STC).md)
* [Italy COVID-19 Case Data with Basemap (STC)](/datasets-details/Italy-COVID-19-Case-Data-with-Basemap-(STC).md)
* [Brazil COVID-19 Case Data with Basemap (STC)](/datasets-details/Brazil-COVID-19-Case-Data-with-Basemap-(STC).md)
* [COVID-19 in Japan Dataset](/datasets-details/Japan.md)
* [COVID-19 in Ghana Dataset](https://github.com/sfu-db/covid19-datasets/blob/master/datasets-details/Ghana.md)
* [COVID-19 in Spain Dataset](/datasets-details/COVID-19-in-Spain-Dataset.md)
* [Detection of COVID-19 using Raman Spectroscopy](/datasets-details/raman_spectroscopy_covid19_detection.md)
#### COVID-19 Impact Datasets
* [COVID-19 impact on education](https://github.com/sfu-db/covid19-datasets/blob/master/datasets-details/COVID-19-impact-on-education.md)
* [Oxford University Dataset on COVID-19 Government Responses](https://github.com/sfu-db/covid19-datasets/blob/master/datasets-details/oxfordUniversity-COVID19-response.md)
* [World Bank Indicators of Interest to the COVID-19 Outbreak](https://github.com/sfu-db/covid19-datasets/blob/master/datasets-details/world-bank-indicator.md)
* [Containment-measure-dataset](/datasets-details/Containment-measure-dataset.md)
* [ACAPS COVID-19: Government Measures Dataset](https://github.com/sfu-db/covid19-datasets/blob/master/datasets-details/ACAPS-COVID19.md)
* [COVID-19 Impact on Power Consumption in India](/datasets-details/covid19_effect_on_power_consumption_india.md)
* [HowsMyFlattening COVID-19 Dataset](/datasets-details/hows-my-flattening-covid19-canad.md)
* [Community Mobility Dataset](/datasets-details/community-mobility-dataset.md)
### IMAGE DATA
* [COVID-19 Image data collections based upon X-ray and CT images of patients](/datasets-details/image-data-chestXray-CTScans.md)
* [Stanford ML Group CheXpert - A Large Chest X-ray dataset](/datasets-details/stanford-chexpert.md)
* [COVID-19 Radiography Dataset](datasets-details/radiography-kaggle-COVID-19-dataset.md)
* [Computed Tomography of Lungs Dataset for COVID19](datasets-details/computed-tomography-of-lungs-dataset-for-COVID19.md)
* [BIMCV - Medical Imaging Databank of the Valencia Region](datasets-details/BIMCV-Medical-Imaging-Databank-of-the-Valencia-Region.md)
* [Radiopaedia COVID-19 CT Lung and Infection Segmentation Dataset](datasets-details/COVID-19-Radiopaedia-CT-Lung-and-Infection-data.md)
* [EU COVID-19 Challenge - Synthetic CT Data for Deep Learning](datasets-details/EU-COVID-19-Challenge-Data-Synthetic-CT.md)
* [COVID-19 CT Lung and Infection Segmentation Benchmark Dataset](datasets-details/COVID-19-CT-benchmark-data.md)
* [MosMed COVID19 Data from Center of Diagnostics and Telemedicine](datasets-details/MosMed-COVID19-Data-from-Center-of-Diagnostics-and-Telemedicine.md)
* [COVID-19 CT Data from Wuhan Tongji Hospital](datasets-details/Wuhan-Tongji-Hospital-CT-Data.md)
* [Covid-19 Xray Dataset from V7 Labs](datasets-details/V7-labs-COVID-19-Xray-data.md)
### TEXT DATA
* [IEEE dataset on COVID-19 Twitter data](/datasets-details/IEEE-twitter-dataset.md)
* [COVID-19 Open Reasearch Dataset Challenge (CORD-19)](/datasets-details/COVID-19-open-research-challenge-nih.md)
* [COVID-19 Multilanguage Tweets Dataset](/datasets-details/COVID-19-multilanguage-tweets-dataset.md)
# LIST OF APIs
-----------------
### COVID-19 news APIs
|API | Description |
| ----------|--------|
|WHO NEWS API | [WHO - Twitter and YouTube API feeds for WHO, and their RSS feeds regarding COVID-19](https://documenter.getpostman.com/view/8854915/SzS7NkAS?version=latest) |
|COVID-19 Tracking Project | [This API provides the details on COVID-19 cases in each of the 50 states in the US](https://documenter.getpostman.com/view/8854915/SzS8rjHv?version=latest) |
| ECDC NEWS API | [Twitter and YouTube API feeds for European Centre for Disease Prevention and Control (ECDC), and their RSS feeds for pulling information](https://documenter.getpostman.com/view/8854915/SzS7NkAQ?version=latest) |
|Coronavirus Smartable (smartable.ai)| [The coronavirus stats and news API offers latest and historic COVID-19 stats and news information per country or state](https://documenter.getpostman.com/view/8854915/SzS7R74q?version=latest)|
### COVID-19 case statistics by regions APIs
|API | Description |
| ----------|--------|
|Coronavirus COVID-19 API (covid19api.com) | [An API for current cases and more information about COVID-19](https://documenter.getpostman.com/view/10808728/SzS8rjbc?version=latest)|
| Health API - COVID-19 (health-api.com) | [Global Coronavirus statistics by country and state](https://documenter.getpostman.com/view/8854915/SzS7R74s?version=latest)|
|Coronavirus Data API (thevirustracker.com)| [Provides global stats, country stats, full timeline, and country timeline for the coronavirus](https://documenter.getpostman.com/view/8854915/SzS7R74n?version=latest)|
|New South Wales Coronavirus Cases| [New South Wales Coronavirus disease 2019 (COVID-19) cases](https://documenter.getpostman.com/view/8854915/SzS7R74r?version=latest) |
|COVID-19 Finnhub API | [Get real-time updates on the number of COVID-19 (Corona virus) cases in the US with a state-by-state breakdown. Data is sourced from CDC and reputable sources](https://documenter.getpostman.com/view/10724784/SzYW3LFa?version=latest)|
| COVID19-India API| [A volunteer-driven API for COVID-19 stats & patient tracing in India (Unofficial)](https://documenter.getpostman.com/view/10724784/SzYXXKmA?version=latest)|
|COVID-19 Statistics API| [Based on public data by Johns Hopkins CSSE ](https://documenter.getpostman.com/view/10724784/SzYXWz3x?version=latest)|
|Chile Corona API | [API to obtain data about coronavirus infections (COVID-19) in Chile](https://documenter.getpostman.com/view/10855464/Szf25VmX?version=latest#intro)|
|Novel Coronavirus COVID-19 API | [This is an API for the Novel Coronavirus (COVID-19) Statistics. Source of data for this API is Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE) Github Repository.](https://documenter.getpostman.com/view/5352730/SzYbyxR5?version=latest) |
|Coronavirus (COVID-19) Outbreak API for Developers|[Provides confirmed cases by country and region, province and state, from CDC, ECDC, WHO, Wikipedia and NOVELCovid](https://documenter.getpostman.com/view/922646/SzYbyci2?version=latest)|
|COVID-19 Nigeria API | [Based on public data from Nigeria Centre for Disease Control](https://documenter.getpostman.com/view/9282328/SzYaUxJy?version=latest)|
|UK Coronavirus Data API| [A live COVID-19 data scraper API provide function with history, and confirmed cases geolocation](https://documenter.getpostman.com/view/9215231/SzYZ2Jss?version=latest)|
|COVID-19 Japan Web API | [Web API to get COVID-19(coronavirus) information of each prefecture in Japan](https://documenter.getpostman.com/view/9215231/SzYaWe6h?version=latest)|
### COVID-19 Other(Healthcare, testing, literature, contact tracing, etc) APIs
|API | Description |
| ----------|--------|
|COVID-19 Elsevier Research API| [A research dataset search engine API (indexing datasets from 60+ scientific data repositories worldwide)](https://documenter.getpostman.com/view/10724784/SzYW3LUn?version=latest)|
|Librairy API | [An open web service to identify drugs mentioned in a text and classify them according to the Anatomical Therapeutic Chemical (ATC) classification system and the Concept Unique Identifiers (CUI) described in the Unified Medical Language System (UMLS)](https://documenter.getpostman.com/view/9215231/Szf25VvG?version=latest) |
| COVID-19 testing locations in Australia | [A single collection with a request for a list of coronavirus testing locations in Australia](https://documenter.getpostman.com/view/9215231/SzYaWe6h?version=latest)|
|Infection Alert System | [Provides a personal risk score and international and multi-level suspicious contact tracking without sending any personal data to the servers](https://documenter.getpostman.com/view/4282443/SzfAymFD?version=latest) |
| CDC Testing (ScrAPI) | [Scraping the number of specimens tested for SARS CoV-2 by CDC labs and U.S. public health laboratories from the CDC website](https://documenter.getpostman.com/view/8854915/SzS7R6gm?version=latest) |
### COVID-19 social media APIs
|API | Description |
| ----------|--------|
| COVID-19 Twitter Searches | [Twitter API search, with a handful of the common search COVID-19 search terms](https://documenter.getpostman.com/view/8854915/SzS7NkEt?version=latest) |
|Twitter Accounts for State Government in 50 US States |[State government Twitter accounts for all 50 states in the United States](https://documenter.getpostman.com/view/8854915/SzYT5MzV?version=latest)|
|Twitter Accounts for State Governors in 50 US States|[State governor Twitter accounts for all 50 states in the United States](https://documenter.getpostman.com/view/8854915/SzYT5MzU?version=latest)|
|Twitter Accounts for State Health Departments in 50 US States | [State health department Twitter accounts for all 50 states in the United States](https://documenter.getpostman.com/view/8854915/SzYT5MzW?version=latest)|
|County Health Departments for All 50 US States|[A single collection with a request for each of the 50 states, pulling a listing of name, website, address, phone, email, twitter, and facebook for all county health departments](https://documenter.getpostman.com/view/8854915/SzYXVdyQ?version=latest)|
|Twitter Accounts for County Health Departments in all 50 US States| [The Twitter accounts for over 300 county health departments across 50 US States](https://documenter.getpostman.com/view/8854915/SzYXVdyR?version=latest)|
# PROJECTS
-----------
Projects related to various datasets have also been added to their respective project's summary page under project sections.
### Spread of Disease / Behaviour Change Simulation projects:
* **[COVID-19 API with Machine Learning prediction:](https://documenter.getpostman.com/view/10877427/SzYW2f8n?version=latest)** The COVID-19 statistics collected from multiple sources and provided as an easy to use API. The data is then processed by Machine Learning algorithms to build disease spread prediction that is updated daily based on the recent data.
* **[PANDEMIK (Behavior Change and Mitigation Simulation):](https://github.com/autonomio/pandemik)** Pandemik is an end-to-end pipeline for simulating behavior change and mitigation effects on public health, economic, and psychological outcomes.
* **[ COVID-19 CovidSim microsimulation:](https://github.com/mrc-ide/covid-sim)** COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.
### COVID-19 Simulation Projects with Impacts on Health, Economy:
* **[Aged Based Simulation of Health and Economic Effects of COVID-19:](https://github.com/petroniocandido/COVID19_AgentBasedSimulation)** Simulation of complex dynamical systems using the individual states of its components (Economic, Aged, Demographics,etc.) to detect global behaviors that emerge due COVID-19. There is also a [medium article](https://towardsdatascience.com/agent-based-simulation-of-covid-19-health-and-economical-effects-6aa4ae0ff397) on this topic by the authors.
* **[Macroeconomic Dynamics and Reallocation in an Epidemic:](https://github.com/petroniocandido/COVID19_AgentBasedSimulation)** In this paper / project the authors argue that endogenous shifts in private consumption behavior across sectors of the economy can act as a potent mitigation mechanism during an epidemic or when the economy is re-opened after a temporary lockdown.
* **[Covid-19-indicator:](https://github.com/sahib-pratap-singh/Covid-19-indicator)** Web based application to analyse the live cases of COVID-19 and is impact on economy.
### Visual Analytics Projects
* **[British Columbia (BC) - Coronavirus Cases dashboard:](https://experience.arcgis.com/experience/a6f23959a8b14bfa989e3cda29297ded)** The BC COVID-19 dashboard for the latest case counts and information on recoveries, deaths, hospitalizations, testing and more.
* **[US county level interactive map of Covid-19 cases (using Geopandas and Bokeh):](https://github.com/mwaugh0328/covid-19-map)** The project creates a static and live/interactive html map (Click on the link!!!) using data from @nytimes that tracks the spread of Covid-19 by date and US counties. Please see @nytimes repository for information regarding the data and it's use.
* **[Coronavirus Visual Analytics:](https://github.com/RongchenGuo/Coronavirus_Visual_Analytics)** A visual analytic system for analyzing big data related to Conornavirus COVID-19 outbreak. The system aims to provide visual insights of big data for clinical researchers. The analytics include **outbreak severity,airline impact and economic recovery**. The live demo is the project can be found on this [link](https://rongchenguo.github.io/Coronavirus_Visual_Analytics/#section2).
### Other Projects / Apps related to COVID-19
* **[BBC Data Unit - Coronavirus crowd funding pubs:](https://github.com/BBC-Data-Unit/coronavirus-crowdfundingpubs)** Analysis of the COVID-19 on crowdfunding for Pubs using the BBC-data-units's dataset.
* **[Coronavirus CLI app:](https://github.com/ahmadawais/corona-cli)** A nodejs based CLI app to provide latest COVID-19 stats across the globe.
* **[ Corona Warn App Server:](https://github.com/corona-warn-app/cwa-server)** The goal of this project is to develop the official Corona-Warn-App for Germany based on the exposure notification API from **Apple** and **Google**.
# Courses Related to COVID-19
-----------
*  [CS 472 Data science and AI for COVID-19 - (Stanford University)](https://sites.google.com/view/data-science-covid-19).
* [CMPT 456 - Information Retrieval and Web Search - (Simon Fraser University)](https://sites.google.com/view/ds-twins/home/cmpt-456)
* [CMPT 459 - Data Mining - (Simon Fraser University)](https://sites.google.com/view/ds-twins/home/cmpt-459)
* [Applied Data Science COVID-19 data analysis - (Udemy)](https://www.udemy.com/course/applied-data-science-covid-19-prototype/).
*  [COVID-19 Data Science Urban Epidemic Modelling in Python - (Udemy)](https://www.udemy.com/course/covid-19-urban-epidemic-modelling-in-python/).
*  [COVID19 Data Analysis Using Python - (Coursera)](https://www.coursera.org/projects/covid19-data-analysis-using-python).
* [Tableau Crash Course: Build and Share a COVID-19 Dashboard - (Udemy)](https://www.udemy.com/course/tableau-crash-course-build-and-share-a-covid-19-dashboard/).
# Contributions
--------------
* [Data Science Reasearch Group - SFU](https://data.cs.sfu.ca/)
* [Medical Image Analysis Lab - SFU](https://www.medicalimageanalysis.com/)