https://github.com/sgearle/bugwas

Locus and lineage tests for bacterial GWAS
https://github.com/sgearle/bugwas

Last synced: about 1 month ago
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Locus and lineage tests for bacterial GWAS

• Host: GitHub
• URL: https://github.com/sgearle/bugwas
• Owner: sgearle
• License: gpl-2.0
• Created: 2015-10-21T17:14:15.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2017-10-05T11:40:15.000Z (about 7 years ago)
• Last Synced: 2024-08-02T11:20:02.388Z (4 months ago)
• Language: R
• Size: 1.47 MB
• Stars: 30
• Watchers: 9
• Forks: 5
• Open Issues: 12
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-bacteria - bugwas - [R] - Locus and lineage tests for bacterial GWAS. (Software packages / GWAS)

README

        
# bugwas

R package to test for locus and lineage associations in bacterial GWAS

To install this package in R:

install.packages("[some_dir]/bugwas_1.0.tar.gz", repos = NULL, type="source")

or

install.packages("https://raw.githubusercontent.com/sgearle/bugwas/master/build/bugwas_1.0.tar.gz", repos=NULL, type="source")

The bugwas_1.0.tar.gz file can be found in the build folder in this repository.

The package requires the modified version of GEMMA version 0.93. The executable file is available in this github repository in the gemma folder.

If you would like to use our R package please cite the paper on the following webpage:

http://www.nature.com/articles/nmicrobiol201641

If you have any queries, please post them on 

https://groups.google.com/forum/#!forum/bacterialgwas-users

Creators:

Sarah Earle, NDM, Oxford University

Jessie Wu, NDM, Oxford University

Daniel Wilson, NDM, Oxford University